Csim026955.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:112004393-112012998[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.5e-11 1.7e-07 32.0 0.0 1 38 542 580 542 585 0.89 2 4 2.4e-13 5.5e-10 40.1 0.1 2 39 597 634 596 637 0.94 3 4 2.8e-17 6.4e-14 52.6 0.0 1 45 651 696 651 696 0.98 4 4 5e-20 1.1e-16 61.4 0.0 1 45 703 748 703 748 0.97
Sequence Information
- Coding Sequence
- ATGCAGATTCCTATGGTAATTTTCGTACTTGCGCTATTTTGCATGGGTCTTCTACGAACCGCCGAACAGCTTAAAATTAAAGGTCTCTGCGAAACTGCCGAGAACACAGACGACATTGCGGACGCTGCTACAGCAACAATTACCGTGTCCGAAAATATTCAACAAACTGTTGTTGGTAACATTGTCAATGCAACGGTAGCCCAAGGTCAATCTTCACCCACAAtacaacatcagcaacatctccagcagcaacaacaacagcagcagcagcaacaacagcaacaacagcagcagcagcaacagcagcaacaacaacagcagcaacaacaaatagctaGTAATGCTGCTGTGCTGACACACACAATAGCAAATGTGAATGCAACAAATGCGCAAACATTAGCAGCAGTTAGTGGTGCCAGTATTGGAAGCGTTGTTTCTACCGCAGGCACATCAGGTCAAACACAGCAATTAACACGCAAATCACGTGTACGCAAGCGTTCTAAATCACCGgacttacaacaacaacatcagcaacagcatcatcagcaacaacatCCACAGGCAATtcttattcaaaatcaaaatcaaacagCTATTGTGAGTTTGCAACAGACATCATCTGGCAATTATATACCAATAACAGCTGGTGGGCAAACAGTGACAACAACAGTAGCTGCAGCCGCCGCTGCCGcacatcaacaacagcagcagcaacaagcgcaacaacaacaccaacaacagctCGACGATTCGGACACGGATAAACCAACATTACAAAAGATTTGTAAAACAGAAGCGTCTGCATCGTCGCCTGCATCATCGGGTTCGTCATCAAATAATGGTGGCAGCGTAACAACAGTAGCAGCACCAGGAACAGCAATTGTGACACAAATTGTAGTAGCACGTGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGCGGCCTACTTGGTGTGCCAATGGGATTTTTAGATTTTGCACCAGAACCACCAGCACCATCGGCAACACCAGTAACTGTAACGGAACACGTTGATCTATCATGTAATCCAAGCACCGATACCAGAGATTTATCAAATCCCACCGAACCGCTCGATATCGACAATCATCTCGCACAACATATGATCCAACGGCTTGATCAATCACCTATGCATACCATACATCATCAAACGGGCGACGAAAGCAATTCAAATCTGGTGCAGCATATAAAGAGTGAAGTGATTGAAGTGAAACAGCAACATCATCAAACACAGCATCAGCTACATACGCAACAAACTATAGCACAGGGACAATCtcagcatcagcaacaacagcagcaacatcagcagcatcaacagcaacagcaacaacagcagacgCATCAGGAAATCTCTGGTGCGACTGTTATGGAGATTGATCCAAGTCAAATCAAACATGAGCCCGGAATGATAATAACGCCTGAGATTGTGAATATGATGACCACCGGACATATGGATATGTACAACTCCGACACGAGCGAGGATTCAATGATGATCGCCAATGGTTCACCCAACGACAATAATGAGCCACACTACACCAATTTGGACCAACAGCACGGCGATAACAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCTTGACGAAAGCATCCGTTACCTATGGCATCCCATCGACAACACTGTGGCAGCGTGCACACCGCATGGGTATTGAAACGCCGAAGAAGGAAGGCGGTACAAAATCATGGAATGAGGATTCACTAAATAGTGCATTGGAAGCGCTACGCACTGGACAGATTTCAGCAAATAAAGCATCCAAAGCATATGGTATTCCGTCCTCGACCCTGTATAAGATAGCACGTCGTGAAGGTATTCGCTTGGCGGCACCATTTAATGCGGCGCCAACAACATGGACACCTGAAGATTTGGAACGTGCATTGGAGGCCATACGTGCTGGTCATACGTCCGTCCAAAAAGCCAGCGCTGAATTTGGTATACCAACAGGAACGCTTTATGGACGTTGTAAACGTGAGGGTATTGAATTGTCGCGTTCAAATCCAACACCTTGGTCTGAAGATGCAATGAATGAAGCATTGAATTCAGTGCGCGTTGGCCAAATGTCCATCAATCAAGCGGCCATACACTACAATCTACCCTACAGTTCACTATATGGACGCTTTAAGCGCGGCAAATATGATGTATCCAATACCAGCGGAACCTCCATTAATAACACATCAGGAAATACATCAGGAAGCATTGAGATCATTGAACATAGTCAAGAGAATTCTTTGCACATGTTTCAGCAACAGTTCCAGTATAGTCCATCGCCgcatcaacagcaacagcagcagcaacaacaacagcagcagcagcaacatcaacaacaacaaccacaaacaCCACAGCATATACAACATGTTGTACACattcaacaacagcaacaacatacaccaagccaacaacagcaacatcaccaacaacagcaacaacatgcgCAACATATCCAACAGCAACAAGATGTTGTAACATCCAGCAGTCAGGTGCAACATTCAACACCAACGGGACAACAAATTCAACAGATTTATCATCACCATAGTACGCCAGAGAGAAGTTGA
- Protein Sequence
- MQIPMVIFVLALFCMGLLRTAEQLKIKGLCETAENTDDIADAATATITVSENIQQTVVGNIVNATVAQGQSSPTIQHQQHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQIASNAAVLTHTIANVNATNAQTLAAVSGASIGSVVSTAGTSGQTQQLTRKSRVRKRSKSPDLQQQHQQQHHQQQHPQAILIQNQNQTAIVSLQQTSSGNYIPITAGGQTVTTTVAAAAAAAHQQQQQQQAQQQHQQQLDDSDTDKPTLQKICKTEASASSPASSGSSSNNGGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIEVKQQHHQTQHQLHTQQTIAQGQSQHQQQQQQHQQHQQQQQQQQTHQEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDNNEPHYTNLDQQHGDNKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNTSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQQQQQQQQQQQQHQQQQPQTPQHIQHVVHIQQQQQHTPSQQQQHHQQQQQHAQHIQQQQDVVTSSSQVQHSTPTGQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200830;
- 90% Identity
- iTF_01486090;
- 80% Identity
- -