Basic Information

Insect: Thecophora atra
Gene Symbol: -
Assembly: GCA_937641085.1
Location: CALMRH010000041.1:524634-531305[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.4e-11 1.3e-07 31.9 0.0 1 38 640 678 640 683 0.89

2 4 1.1e-13 4.2e-10 39.9 0.1 2 39 695 732 694 735 0.94

3 4 1.3e-17 4.9e-14 52.5 0.0 1 45 749 794 749 794 0.98

4 4 2.3e-20 8.9e-17 61.3 0.0 1 45 801 846 801 846 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.4e-11	1.3e-07	31.9	0.0	1	38	640	678	640	683	0.89
2	4	1.1e-13	4.2e-10	39.9	0.1	2	39	695	732	694	735	0.94
3	4	1.3e-17	4.9e-14	52.5	0.0	1	45	749	794	749	794	0.98
4	4	2.3e-20	8.9e-17	61.3	0.0	1	45	801	846	801	846	0.97

Sequence Information

Coding Sequence: ATGGAGCACAAAAGCCCAACGCAGCGCAATGAAAACCAAGAAATGGCGTCGCTGATGGAAGCTGGACACAGAAAAGACGAGGCGATGGATGCGAAAATTTTTATCATTTACCGCGTTTTAATGATGACCGAAAAATCATCCACTCTTTTTAAGTTTTGTTTTTTTTTTAATTTTGCTATATTCATCGGACAGTTTTCCTTGTTGCAGCCTCCGTCGCCGCCTCCTTCGGGATTCTCGACTCCCTGGAAGCAGCTTCCTTGGCTTTTAATCAACGTTTTCTCGGGTCTCCTTCGTACAGCTGAACAGTTGAAAATCAAAGGTCTGTGCGAGACGGCCGAGAGCACCGACGACATCGCCGACGCTGCCACAGCCACAATCACGGTGTCGGAAAACATTCAGCAGGCCGTCGTAGGCACCATCGTCAATGCTACGGTAGCCCAAGGCCAAGCCTCGCCCTCCACCGCAGCCCACCACCACCAGCAACAGCACCAACAACAGCAGCAGCATCAGCAGCAAGTCGCCGCCAACGCTGCCGTCCTGACGCACACACTCGCCAACGTCAGTGGATCAGCGGGCGCGCACACGCAGCAACTGGTCACAGCCGGCGGCACGATTGCCAACATTGTAGCCGCCACAGCGATCAATCCGCAGCAGCAGCAGCAGCAGCTTGTGCGCAAGTCACGCATCCGCAAGCGCTCcaggtcacccgatctgcagcaccaccaccaacagcagcagcagcaacatcaggcgattcttatacagaaccagaatcaagccatcgtcagcttgcagcagacgtcgactggcagctacataccgatcacggccggtgttcaagcgttgacaacgtccgcggcggccgctgctgctcatcagcatcagcagcaagtgcatcagcaccagcagcagcagcaccaacaacagctcgacgattccgattgcgacaagccgtcgctacaaaagatctgcaaaaccgaggcttcagtggcTTCGTCGCCGGGTTCGTCGGGCTCCTCCACGAACAATGCTGGCAGCGTAACGACAGTCGCAGCACCCGGAACAGCAATCGTCACACAAATCGTTGTAGCACGCGACGGCAAGGATAAGAATATGACAAGCTTAGGCATGGGCATGAATGGCGGATTACTTGGAGTGCCGATGGGATTTTTAGACTTTGCTCCCGAACCACCAGCACCTTCAGCCACACCTGTCACCGTCACCGAACACGTCGACTTGTCCTGCAATCCCAGCACCGACACCAGAGATCTATCAAATCCCACCGAACCGCTCGATATCGACAATCATCTTGCACAGCACATGATCCAAAGACTCGATCAATCACCGATGCATACAATACATCATCAGACTGGAGACGAGAGCAACTCGAATCTCGTgcaacatattaaaagtgaagtgattgaggttaaacaacagcagcagcaacagcagcagcagcaacaacagcagcagcagcaacagcagcaacatcagcatcatcagacacatcaactacatacacaacaacaacaaatatcacagggacaatcgccacatcagcagcagcagcagcagcagcaacaacagcagcagcaacagcaactgcaccagcaacaccaacaacagcaacaacatcaacagcagcaacaacaacacgcgcaccaagaaatcagcggtgcaactgtcatggAAATCGATCCCAGTCAAATAAAACACGAGCCCGGAATGATTATAACACCAGAAATCGTTAATATGATGACCACTGGCCATATGGATATGTACAATTCCGACACCAGTGAAGATTCAATGATGATCGCCAACGGTTCGCCCAACGACAATAACGAGCCTCATTACACCAATTTGGACCAACAACACGGTGGCGATATCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACTCAAGATGATATGAATTCAGCTTTAGATGCTCTGAAGAATCAAAACATGAGTTTGACGAAAGCATCTGTAACGTATGGCATCCCATCGACCACGCTTTGGCAGCGAGCTCATCGCATGGGCATCGAAACGCCAAAGAAGGAAGGCGGCACGAAGTCGTGGAATGAGGACTCGTTAAATAGCGCCTTAGAAGCGCTTCGTACGGGACAGATATCCGCGAATAAAGCATCCAAAGCGTATGGAATTCCGTCATCGACATTGTATAAAATTGCTCGTCGCGAAGGAATCCGTTTGGCGGCACCATTCAACGCCGCGCCCACAACATGGACGCCGGAGGATTTGGAACGCGCCCTTGAGGCCATTCGAGCCGGCCACACGTCCGTCCAGAAGGCGAGCGCCGAATTTGGCATACCAACAGGAACACTTTATGGACGCTGCAAGCGCGAAGGCATCGAGTTGTCCCGATCGAATCCGACGCCGTGGTCTGAAGACGCCATGAACGAGGCATTGAATTCCGTTCGCGTCGGCCAAATGTCCATCAATCAAGCGGCGATTCATTACAATCTGCCCTACAGTTCACTCTACGGCCGCTTCAAACGCGGCAAGTACGACGTCTCCAACACCAGCGGCATCTCCATCAACAACACGTCCGGCAACACGTCCGGCAGCATTGAGATCATCGAGCACAGTCAAGAGAATTCGttgcacatgtttcagcagcagttccaatacagtccatcgccgcatcagcaacaacaacagcagcagcagcagcagcagcagcagcaacatcagccgcagacaccgcaacacatccaacacgatgtggtgacatccagcagtcaggtgcagcagcacgcgaccccgaccgggcagcagatccagcaaatctaccatcaccacagcacaccggagaggagttga
Protein Sequence: MEHKSPTQRNENQEMASLMEAGHRKDEAMDAKIFIIYRVLMMTEKSSTLFKFCFFFNFAIFIGQFSLLQPPSPPPSGFSTPWKQLPWLLINVFSGLLRTAEQLKIKGLCETAESTDDIADAATATITVSENIQQAVVGTIVNATVAQGQASPSTAAHHHQQQHQQQQQHQQQVAANAAVLTHTLANVSGSAGAHTQQLVTAGGTIANIVAATAINPQQQQQQLVRKSRIRKRSRSPDLQHHHQQQQQQHQAILIQNQNQAIVSLQQTSTGSYIPITAGVQALTTSAAAAAAHQHQQQVHQHQQQQHQQQLDDSDCDKPSLQKICKTEASVASSPGSSGSSTNNAGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIEVKQQQQQQQQQQQQQQQQQQQHQHHQTHQLHTQQQQISQGQSPHQQQQQQQQQQQQQQQLHQQHQQQQQHQQQQQQHAHQEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDNNEPHYTNLDQQHGGDIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNTSGISINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQQQQQQQQQQQQHQPQTPQHIQHDVVTSSSQVQQHATPTGQQIQQIYHHHSTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01200830;
90% Identity: -
80% Identity: -