Tpra030305.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- -
- Assembly
- GCA_949775025.1
- Location
- OX459031.1:14431663-14441100[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.6e-11 1.8e-07 32.0 0.0 1 38 555 593 555 598 0.89 2 4 3e-13 5.6e-10 40.0 0.1 2 39 610 647 609 650 0.94 3 4 3.5e-17 6.5e-14 52.6 0.0 1 45 664 709 664 709 0.98 4 4 2.1e-19 3.9e-16 59.7 0.0 1 44 716 760 716 761 0.96
Sequence Information
- Coding Sequence
- ATGCAGATTCCTATGGTAGTACTCGTACTTACGCTATTTTGCATGGTAATGAGACACTTTGCTGTAGGTTTGTTACGCACCGCCGAACAGCTTAAAATTAAAGGACTCTGCGAAACCGCCGAGAACACAGACGACATTGCGGACGCTGCTACGGCAACGATTACCGTGTCCGAAAATATTCAACAAGCCGTTGTTGGTAACATTGTCAATGCAACGGTAGCCCAAGGTTTAGCTTCACCTACAATACAACATCAGCAACATcttcagcaacaacagcagcaacaacaacagcagcaacaacagcagcaacagcaacaacaacagcagcagcaacaacagcagcaacaacagcaacagcagcagcaacaacaacagcaacagcagcaacaacaagtaGCTAGTAATGCCGCAGTGCTGACACACACAATAGCAAATGTGAATGCAACAAATGCGCAAACATTAGCAGCTGCTAGTGGCAGTATTGGGAGCATTGTTGCCACCGCAGGCACATCAGGTCAAACACAGCAATTAACACGTAAATCACGTGTACGCAAGCGTTCTAAGTCGCCGGActtacaacaacagcatcaacaacaacatcatccaCAGGCGATTcttattcaaaatcaaaatcaaactgCTATCGTGAGTCTGCAACAGACATCATCTGGAAATTATATACCAATAACAGCTGGTGGCCAAACAGTGACAACAACAGTAGCTGCAGTCGCCGCTGCTGCACACCAACAACAagcgcaacaacaacagctcgACGACTCGGACACGGATAAACCGTCATTGCAAAAGATTTGCAAAACAGAAGCGTCTGCATCGTCGCCTGCATCTTCGGGTTCGTCATCAAATAATGGTGGCAGCGTAACAACAGTAGCAGCACCAGGAACAGCAATAGTGACACAAATTGTAGTAGCACGTGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTACTTGGTGTGCCAATGGGATTTTTAGATTTTGCACCTGAACCACCAGCACCATCGGCAACACCTGTTACTGTAACGGAACACGTTGATCTATCATGTAATCCTAGCACCGATACTAGAGATTTATCAAATCCCACCGAACCGCTCGATATCGACAATCATCTCGCACAGCATATGATCCAACGGCTTGATCAATCACCTATGCATACCATACATCATCAAACTGGCGACGAAAGTAATTCAAATCTGGTGCAACAcataaaaagtgaaataattgaagtaaagcagcaacagcaacatcatcaaACACAGCATCAGTTGCATACGCAGCAAACTATAGTGCAGGGACAATCtcagcatcagcaacaacagcagcaacatcagcagcatcaacagcaacaacaacagcagcaacaacaggcGCATCAGGAAATCTCTGGTGCGACTGTTATGGAGATTGATCCAAGCCAAATCAAACATGAGCCCGGAATGATAATAACGCCAGAGATTGTGAACATGATGACCACCGGACATATGGATATGTACAACTCCGACACGAGCGAGGATTCAATGATGATCGCCAACGGTTCACCCAACGATAATAATGAGCCACACTACACCAATTTGGACCAACAGCACGGCGATAACAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCTTGACGAAAGCATCCGTTACCTATGGCATCCCATCGACAACTCTGTGGCAGCGAGCACACCGCATGGGTATTGAAACGCCGAAGAAGGAAGGCGGTACAAAATCATGGAATGAGGATTCGCTTAATAGTGCATTGGAAGCGTTACGCACTGGACagatttcagcaaataaagcaTCCAAAGCTTACGGTATTCCGTCCTCGACACTGTATAAGATTGCACGTCGTGAAGGTATTCGTTTGGCGGCACCATTTAATGCGGCGCCTACAACATGGACGCCTGAAGATTTGGAACGTGCATTGGAGGCCATACGTGCTGGTCATACGTCCGTCCAAAAGGCCAGTGCTGAATTTGGTATACCAACAGGAACACTTTATGGACGTTGTAAACGTGAGGGTATTGAATTATCACGTTCAAATCCAACACCATGGTCTGAAGATGCAATGAATGAGGCATTGAATTCAGTGcgCGTTGGCCAAATGTCCATCAATCAAGCGGCCATACACTACAATCTACCCTACAGTTCATTATATGGACGCTTTAAGCGTGGCAAATATGATATATCAAATACCAGCGGAACCTCCATCAATAATACATCAGGAAATACATCAGGAAGCATTGAGATCATTGAACATAGTCAAGAGAATTCTTTACACATGTTTCAGCAACAGTTCCAGTATAGTCCATCGCctcatcaacaacagcagcagcaacagcaacaacagcaacatcaacaacaacagccacaAACACCACAACATATACAACATGTTGTACAcattcaacagcaacaacatacaccaagccaacaacagcaacatcaccaacagcaacaacatgcgCAACATATCCAACAGCAACAAGATGTTGTAACATCCAGCAGTCAGGTGCAGCATTCAACACCAACAGGACAACAAATTCAACAGATTTATCATCATCATAGTACGCCAGAGAGAAGTTGA
- Protein Sequence
- MQIPMVVLVLTLFCMVMRHFAVGLLRTAEQLKIKGLCETAENTDDIADAATATITVSENIQQAVVGNIVNATVAQGLASPTIQHQQHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVASNAAVLTHTIANVNATNAQTLAAASGSIGSIVATAGTSGQTQQLTRKSRVRKRSKSPDLQQQHQQQHHPQAILIQNQNQTAIVSLQQTSSGNYIPITAGGQTVTTTVAAVAAAAHQQQAQQQQLDDSDTDKPSLQKICKTEASASSPASSGSSSNNGGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEIIEVKQQQQHHQTQHQLHTQQTIVQGQSQHQQQQQQHQQHQQQQQQQQQQAHQEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDNNEPHYTNLDQQHGDNKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDISNTSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQQQQQQQQQHQQQQPQTPQHIQHVVHIQQQQHTPSQQQQHHQQQQHAQHIQQQQDVVTSSSQVQHSTPTGQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200830;
- 90% Identity
- iTF_00257732; iTF_00972107;
- 80% Identity
- -