Tfer001233.1
Basic Information
- Insect
- Tetanocera ferruginea
- Gene Symbol
- -
- Assembly
- GCA_958299015.1
- Location
- OY282640.1:8532680-8544372[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 2e-07 32.0 0.0 1 38 587 625 587 630 0.89 2 4 4.4e-13 6.3e-10 40.0 0.1 2 39 642 679 641 682 0.94 3 4 5.2e-17 7.4e-14 52.6 0.0 1 45 696 741 696 741 0.98 4 4 2.6e-19 3.7e-16 59.9 0.0 1 43 748 791 748 793 0.96
Sequence Information
- Coding Sequence
- ATGTGGATTATACCGCGTGCATACCAAACAACGGGATCCATAACTTTACTGACTGATAAACCAGCCTTGGCCTTCGCTGGCACCGATTTGCCTGGAGAAACCCATTGTTTTGTCTGCTGTTTGGTCTCTGGTGTCTTCACGGGTCTGCTTCGCACAGCTGAACAGCTTAAAATAAAGGGTCTCTGCGAAACCGCTGAGAATACAGACGACATTGCTGACGCTGCCACAGCAACGATTACCGTCTCCGAAAATATACAACAGGCAGTTGTAGGTAATATTGTGAATACCACAATAGCCCAAGGTCCACCATCACCCACAAcacagcatcaacaacaacaacagcagcagcaacaacaacagcagcagcaacaacagcagcagcagcagcagcagcagcagcatcagcaacatcagcagcaacaagCTGCTGTTAATGCAGCCGTGCTGACACACACACTCTCCAATGTTAATACAGCGAATGCACAGCAATTAGCAACAGCAGGTAGCAGCATTGGTAACATTGTTACCGGCACAGTAGCCAGtacacaacagcagcaacaattgGCACGCAAATCACGCATACGCAAGCGTTCTAAATCACCAGATCTACAGTTACagcaacagcaccaacaacagcatcaacacCAGCATCCACAAGCAATTCttatacaaaatcaaaatcaagctTCCATTGTTAGCTTGCAACAAACCTCCAGCGGCAACTATATACCGATTACCGGTCAATCGTTGACCACAACAACCACcgctcatcatcatcaacagcaaTCGCAGCATCATCAGCAGCAGCTTGACGACTCGGACACAGACAAGCCAACGCTACAGAAGATTTGCAAAACAGAAGCATCTGCCGCATCATCGCCAGGTTCATCCGGTTCATCGTCGAATAATGCTGGCAGCGTAACAACAGTTGCAGCACCCGGAACAGCAATCGTCACACAAATTGTAGTAGCACGCGACGGCAAAGATAAAAATATGACTAGCTTAGGCATGGGCATGAATGGCGGTCTTCTTGGCGTACCAATGGGCTTTTTAGATTTTGCACCTGAACCACCAGCACCATCAGCCACACCTGTAACCGTTACGGAACACGTTGATTTATCGTGTAATCCCAGCACCGACACCAGAGATTTATCAAATCCCACCGAACCGCTCGATATCGACAATCATCTTGCACAGCATATGATCCAAAGGCTTGATCAGTCACCAATGCATACCATACATCATCAAACCGGTGACGAGAGCAACTCAAATTTGGTGCAACACATCAAAAGTGAGGTGATTGAGGttaaacagcagcagcagcagcaacaacagcagcaacaacaacatcatcagaCACAACATCAACTGCATACACAACAAATCTCGCAAGGACAATCACcgcatcagcagcaacaactgcatcagcaacatcaacagcaacaacaacagcaacaacagcagcaacaacagcaacaacagcagcaacaacaacaacagcatcaagaAATCACTGGAGCGACTGTTATGGAAATCGATCCAAGTCAAATAAAACATGAACCCGGAATGATTATAACGCCGGAAATAGTGAACATGATGACCACTGGACATATGGATATGTACAACTCCGACACCAGTGAGGATTCAATGATGATCGCCAACGGCTCACCCAACGATAATAATGAGCCCCACTACACCAATCTGGACCAACAGCATGGTGGCGATAACAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAATATGAGTTTGACGAAAGCATCCGTAACATATGGTATACCATCGACAACACTTTGGCAACGTGCTCATCGTATGGGCATCGAAACGCCGAAGAAGGAAGGCGGTACTAAATCGTGGAATGAGGATTCGTTAAACAGTGCATTGGAAGCTCTGCGTACGGGACAGATTTCCGCGAATAAAGCATCCAAAGCCTACGGCATTCCGTCCTCGACATTGTATAAGATTGCACGTCGTGAGGGTATCCGTTTGGCGGCACCATTTAATGCGGCGCCAACAACATGGACGCCAGAGGACTTAGAGCGTGCCCTTGAGGCAATACGTGCTGGCCACACGTCCGTCCAGAAGGCGAGCGCCGAATTTGGCATACCAACAGgCACACTCTATGGACGCTGTAAACGCGAAGGCATTGAATTGTCACGTTCGAATCCCACGCCTTGGTCCGAAGATGCCATGAATGAGGCATTGAATTCTGTGCGCGTTGGCCAAATGTCCATCAATCAAGCGGCCATACACTACAATCTACCCTATAGCTCGCTATATGGACGCTTTAAACGTGGCAAATATGATGTTACCAACACCAGCGGCACCTCCATCAACAACACCTCGGGCAACACATCCGGCAGCATTGAGATTATCGAGCATAGCCAAGAGAATTCTTTGCACATGTTTCAGCAACAGTTCCAATACAGCCCATCGCcgcatcaacaacagcaacatcagccACAAACACCGCAACATATACAGCACGTAGTGCATATTCAACAGCAACACACACCAacccaacagcaacaacagcagcaacatcaccaacagcaacaacatatcCAACATCAGCAGGATGTGGTAACATCTAGCAGTCAggtgcagcaacagcaacaacatgcaACAGCGAGTGGACAACAGATCCAGCAAATCTATCACCATCACAGCACACCAGAGAGAAGTTGA
- Protein Sequence
- MWIIPRAYQTTGSITLLTDKPALAFAGTDLPGETHCFVCCLVSGVFTGLLRTAEQLKIKGLCETAENTDDIADAATATITVSENIQQAVVGNIVNTTIAQGPPSPTTQHQQQQQQQQQQQQQQQQQQQQQQQQHQQHQQQQAAVNAAVLTHTLSNVNTANAQQLATAGSSIGNIVTGTVASTQQQQQLARKSRIRKRSKSPDLQLQQQHQQQHQHQHPQAILIQNQNQASIVSLQQTSSGNYIPITGQSLTTTTTAHHHQQQSQHHQQQLDDSDTDKPTLQKICKTEASAASSPGSSGSSSNNAGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIEVKQQQQQQQQQQQQHHQTQHQLHTQQISQGQSPHQQQQLHQQHQQQQQQQQQQQQQQQQQQQQQQHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDNNEPHYTNLDQQHGGDNKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQQHQPQTPQHIQHVVHIQQQHTPTQQQQQQQHHQQQQHIQHQQDVVTSSSQVQQQQQHATASGQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200830;
- 90% Identity
- iTF_01181070;
- 80% Identity
- -