Pcor028833.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- -
- Assembly
- GCA_943735905.1
- Location
- CALSEP010001266.1:87283-103751[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.5e-11 1.7e-07 32.0 0.0 1 38 570 608 570 613 0.89 2 4 2.7e-13 5.4e-10 40.0 0.1 2 39 625 662 624 665 0.94 3 4 3.1e-17 6.3e-14 52.6 0.0 1 45 679 724 679 724 0.98 4 4 1.6e-19 3.2e-16 60.0 0.0 1 43 731 774 731 776 0.96
Sequence Information
- Coding Sequence
- ATGCCAAGAATTGTCTTTTGCTGGAATCGTACAACATTAGCAAGGCAGGAAAAGGATGATGACGATGATGAGTGTGGGATGATGAGACGGGGTCTGCTTCGCACAGCCGAACAGCTTAAAATCAAGGGTCTCTGCGAAACCGCTGAGAACACAGACGATATCGCTGACGCTGCCACAGCAACGATTACCGTCTCCGAAAATATACAACAAGCCGTTGTTGGTAATattgtcaataccacaatagctcaaggtccaccctcacccacaacacagcatcagcagcagcaacaacaacaacaacaacagcagcagcagcaacaacaacagcaacagcagcagcaacagcatcagcagcaacagcaacaagcggctgctaatgccgccgtgttgacacacactatcgccaatgttaatacagcaaatgcacagcaattagcaacagcaggtggcagcattggcaacattgttaccggcacagtagccaatacacaacaacagcaacaattggcacgcaaatcacgcatacgcaagcgttccaaatcaccagatctacagctacagcaacagcaccaacaacaacaacagcagcagcagcatcatccacaagcaattcttatacaaaatcaaaatcaagcttccattgttagcttgcaacagacctccagcggcaactatataccgattactggtcagacgctaaccacaacaaccgccgctcatcatcatcaacaacaacagcattcacaacatcatcaacagcTTGACGATTCGGATACAGACAAGCCAACGCTACAGAAAATTTGCAAAACAGAAGCATCTGCTGCATCATCGCCAGGTTCATCGGGTTCATCTTCGAATAATGCTGGTAGCGTAACAACAGTTGCAGCACCCGGAACAGCAATCGTCACACAAATTGTAGTAGCACGCGACGGCAAAGATAAAAATATGACTAGCTTAGGCATGGGCATGAATGGCGGTCTTCTTGGCGTACCGATGGGCTTTTTAGATTTTGCACCCGAACCACCAGCACCATCAGCTACACCTGTAACTGTTACGGAACACGTTGATCTATCGTGTAATCCCAGCACTGACACCAGAGATTTATCAAATCCCACCGAACCACTTGATATCGACAATCATCTAGCACAGCACATGATCCAAAGGCTTGATCAGTCACCAATGCATACCATGCATCATCAAACCGGTGACGAGAGCAACTCAAATTTGGTGCAACACATCAAAAGTGAggtgattgaagttaaacagcagcagcagcaacaacagcagcaacaacagcatcatcagacgcaacaccaactgcatacacaacaaatttcgcaaggacaatcaccgcatcagcagcaacaactgcatcagcaacatcaacagcaacaacaacagcagcagcaacaacaacagcagcagcagcaacagcagcaacaacaggcgcatcaagaaATCACTGGTGCGACTGTTATGGAAATCGATCCAAGTCAAATAAAACATGAACCCGGAATGATAATAACGCCGGAAATAGTGAACATGATGACCACTGGACATATGGATATGTACAACTCCGACACCAGTGAGGATTCAATGATGATCGCCAACGGCTCACCCAACGATAATAATGAGCCTCACTACACCAATCTGGACCAACAGCATGGTGGCGATAACAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAATATGAGTTTGACGAAAGCATCTGTAACATATGGTATACCATCGACTACTCTTTGGCAACGAGCTCATCGTATGGGTATCGAAACGCCGAAGAAGGAAGGCGGCACTAAATCCTGGAATGAGGATTCGTTAAACAGTGCATTGGAAGCTCTGCGTACGGGACAGATTTCCGCGAATAAAGCATCCAAAGCCTACGGTATTCCGTCCTCGACATTGTATAAGATTGCACGTCGCGAAGGTATCCGTTTGGCAGCACCATTTAATGCGGCGCCAACAACATGGACACCAGAGGATTTAGAGCGTGCCCTAGAGGCAATACGTGCTGGCCACACGTCCGTCCAGAAGGCGAGCGCCGAATTTGGCATACCAACAGGGACACTCTATGGGCGCTGTAAACGCGAAGGTATTGAATTGTCACGTTCGAATCCCACGCCGTGGTCCGAGGATGCCATGAATGAGGCATTGAATTCTGTGCGTGTTGGCCAGATGTCCATCAACCAAGCGGCCATACACTACAATCTACCCTACAGCTCGTTATATGGACGCTTTAAACGTGGCAAATATGATGTTACCAACACCAGTGGCACCTCCATCAACAACACCTCGGGCAATACATCCGGAAGCATTGAGATAATTGAGCATAGCCAAGAGAATTCTTTGCACATGTTTcagcaacagttccaatacagtccatcgccgcatcaacaacagcaacaccagccacagacaccgcaacacatacagcacgtagtgcacattcaacagcaacacacaccaacccaacagcaacaacagcagcaacatcaccaacagcaacaacatatccaacatcagcaggatgtggtaacatctagcagtcaggtgcagcaacagcagcaacatgcaacagcgagcgggcagcagatccagcaaatctatcatcatcacagcacaccagagagaagttga
- Protein Sequence
- MPRIVFCWNRTTLARQEKDDDDDECGMMRRGLLRTAEQLKIKGLCETAENTDDIADAATATITVSENIQQAVVGNIVNTTIAQGPPSPTTQHQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQAAANAAVLTHTIANVNTANAQQLATAGGSIGNIVTGTVANTQQQQQLARKSRIRKRSKSPDLQLQQQHQQQQQQQQHHPQAILIQNQNQASIVSLQQTSSGNYIPITGQTLTTTTAAHHHQQQQHSQHHQQLDDSDTDKPTLQKICKTEASAASSPGSSGSSSNNAGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTMHHQTGDESNSNLVQHIKSEVIEVKQQQQQQQQQQQHHQTQHQLHTQQISQGQSPHQQQQLHQQHQQQQQQQQQQQQQQQQQQQQQAHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDNNEPHYTNLDQQHGGDNKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQQHQPQTPQHIQHVVHIQQQHTPTQQQQQQQHHQQQQHIQHQQDVVTSSSQVQQQQQHATASGQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200830;
- 90% Identity
- iTF_01414880;
- 80% Identity
- -