Cqua000683.1
Basic Information
- Insect
- Conops quadrifasciatus
- Gene Symbol
- -
- Assembly
- GCA_949752815.1
- Location
- OX457077.1:5663778-5672891[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-11 1.1e-07 32.0 0.0 1 38 552 590 552 595 0.89 2 4 1.3e-13 3.4e-10 40.0 0.1 2 39 607 644 606 647 0.94 3 4 1.5e-17 3.9e-14 52.6 0.0 1 45 661 706 661 706 0.98 4 4 2.7e-20 7.1e-17 61.4 0.0 1 45 713 758 713 758 0.97
Sequence Information
- Coding Sequence
- ATGTTGAATGAGAATATCTGTCAAACGCCACGGTTGTTTCTTGGTCTGCTTCGTACTGCTGAGCAACTAAAAATCAAGGGCCTCTGCGAAACCGCCGAAAGTACAGACGATATTGCAGACGCCGCCACAGCAACAATCACCGTGTCGGAAAACATACAGCAGGCCGTCGTTGGCAATATTGTCAATGCTACGGTAGCCCAAGGCCAAGCCTCGCCCACAACCGtgcaccaccaccagcaacaacagcagcagcaccaacacgCCGCTACCAATGCTGCCGTTCTGACCCATACACTCGCCAATGTCAATACCGCTGGCGGCAACACGCAGCAAATTGTAACCGCTGGAGGAACGATTGCCAACGTTGTTACGGCCACAGCTGTcacaaatcaacaacaacaacagcaacttgTGCGCAAGTCGCGCATTCGCAAGCGTTCCAAATCGCCCGACTTGCAGCatcaccaacagcaacaacaacagcagcaacagcagcagcaccaccagcaGTCGCACGCTCCGCAAGCGATTCtcattcaaaatcaaaatcaaaccGCCATCGTGAGTTTGCAGCAGACTTCGAGCGGTAGTTATATACCGCTGACTGGCGGAGGTCAGGCACTGACAACAAcagctgccgccgccgccgccgctgctcatcaacagcaacagcaccagcaAGCCCAATTGGACGACTCGGACACGGACAAACCATCGCTGCAGAAGATTTGTAAAACTGAGGCTTCGGCGGCATCATCGCCGGGTTCGTCGGGCTCTTCTTCGAACAATGCCGGCACTGTAACAACAGTCGCACCGCCCGGTACAGCAATTGTTACACAGATCGTTGTAGCACGCGACGTCAAGGATAAGAATATGACAAGCTTAGGAATGGGCATGAATGGCGGCTTACTTGGCGTACCGATGGGCTTTTTAGATTTTGCTCCTGAACCACCAGCACCATCAGCAACACCTGTCACTGTAACCGAACACGTTGATCTTTCCTGCAATCCCAGCACAGACACTAGAGATTTATCAAATCCCACCGAACCGCTCGATATCGACAATCATCTTGCACAGCATATGATTCAGAGACTTGATCAATCGCCAATGCATACCATACATCATCAGACCGGCGACGAGAGCAAATCAAGTCTCGTGCAGCACATTAAAAGCGAGGTGATTGAGGttaagcaacagcagcagcaacagcagcaacaacaacatcatcaggCACATCAGTTGCATACGCAACAACAAATCTCACAGGGGCAATCAccgcaccaacaacagcagcagcagcaacaacaactacatcagcagcaacatcaacagcagcagcagcagcagcaacaacaacagcaacaacaccagcagcagcaacaacaacaacacgcgCATCAAGAAATTTCCGGTGCGACCGTTATGGAAATCGATCCGAGTCAAATAAAGCATGAACCGGGCATGATTATCACACCAGAGATCGTGAATATGATGACCACTGGACATATGGATATGTACAACTCTGATACCAGTGAGGATTCAATGATGATCGCCAACGGTTCACCCAACGACAATAATGAGCCGCATTATACCAATTTGGACCAACAGCACGGTGGCGATATCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACTCAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAATATGAGCTTGACGAAAGCGTCCGTAACGTACGGCATCCCGTCGACAACGCTCTGGCAGCGCGCCCATCGTATGGGCATTGAAACGCCGAAAAAGGAAGGCGGCACAAAGTCATGGAATGAGGATTCATTGAACAGTGCACTAGAAGCGTTACGTACGGGACAGATTTCCGCGAACAAAGCATCCAAAGCGTACGGTATTCCGTCCTCGACTCTATACAAAATCGCACGTCGCGAGGGTATCCGTTTGGCGGCACCATTCAATGCGGCGCCCACAACATGGACACCGGAGGATTTGGAACGTGCTCTGGAGGCAATACGAGCTGGTCACACGTCCGTCCAGAAGGCGAGCGCCGAATTTGGCATACCAACAGGAACACTCTACGGCCGCTGTAAACGTGAAGGCATAGAACTGTCTCGATCGAATCCTACGCCTTGGTCCGAGGATGCAATGAACGAAGCATTGAATTCTGTACGCGTTGGCCAAATGTCCATCAATCAGGCGGCTATACATTATAACCTTCCGTACAGTTCACTGTATGGACGCTTCAAACGCGGCAAGTATGACGTCAGCAACACTAGCGGCGGCATCTCGATCAACAATACTTCCGGCAACACCTCGGGCAGCATTGAAATTATCGAACACAGTCAGGAGAATTCTCTGCACATGTTCCAGCAACAGTTTCAGTATAGTCCATCGCctcaccagcagcagcagcagcaacaaccacagcaacagcaacaacatcaatcgCCGGCAACGCAGCATATACAACATGTCGTGCATattcaacagcagcagcagcacaccccaacccagcagcagcagcaaccacaacagcagcagcatcatcaacaacagcaacagcaacatatCCAACATCAGCAGGATGTAGTGACATCGAGCAGCCaagtgcagcagcaacacGCAACGCCGACGGGCCAGCAGATCCAGCAGATCTACCATCATCACAGCACACCGGAGAGAAGTTGA
- Protein Sequence
- MLNENICQTPRLFLGLLRTAEQLKIKGLCETAESTDDIADAATATITVSENIQQAVVGNIVNATVAQGQASPTTVHHHQQQQQQHQHAATNAAVLTHTLANVNTAGGNTQQIVTAGGTIANVVTATAVTNQQQQQQLVRKSRIRKRSKSPDLQHHQQQQQQQQQQQHHQQSHAPQAILIQNQNQTAIVSLQQTSSGSYIPLTGGGQALTTTAAAAAAAAHQQQQHQQAQLDDSDTDKPSLQKICKTEASAASSPGSSGSSSNNAGTVTTVAPPGTAIVTQIVVARDVKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESKSSLVQHIKSEVIEVKQQQQQQQQQQHHQAHQLHTQQQISQGQSPHQQQQQQQQQLHQQQHQQQQQQQQQQQQQHQQQQQQQHAHQEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDNNEPHYTNLDQQHGGDIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNTSGGISINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQQQQQPQQQQQHQSPATQHIQHVVHIQQQQQHTPTQQQQQPQQQQHHQQQQQQHIQHQQDVVTSSSQVQQQHATPTGQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200830;
- 90% Identity
- iTF_01200830;
- 80% Identity
- -