Osyl005789.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905404295.1
- Location
- FR990126.1:13804127-13817229[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-78 2.1e-73 247.8 19.5 1 266 139 407 139 428 0.88 2 2 1 2.6e+04 -5.8 17.8 1 44 429 472 429 503 0.70
Sequence Information
- Coding Sequence
- ATGGGCAGGCGGTCGAAATTAGCTACGCCGGACAACAGCGACGAAGAAAGCGGTGATGCATTTACTGATGGAGATTTCGGTGACTCTGACGAAGATACCATCGTGGAAAAGAATGACAACTTAAAGAAAGGACGGTTGCCTCTTAATGAGACGGTAAACGTAGAAGTCAAGGAACCGGGTCACGAGACCTGTGACAAAATAAATGGAAACCATTCAGTTGAACATGTTAATGGACAAATAAATCCTGGCACTGTCAACGGGTTTAAAAATGGAGACATTACAGAATCCAGTAGCTCATCCAAAGATAGTATCGATGATATCAATGGAGATCAGATTGCAGTGGAAACGCGACGAGATTCACATAGCGACAATAATCCTTCAATAATTGGAATTCTTGGAGATCAGCAGAACCATGCGGAGCAGCGGCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCCTACGACATGTACGCCGAGACGGTGGGTCGCGGCGGGCGCACGCGGCTGGCCGTCATGAGCCCGGCCGGGCTGCACTCGCCGCGCCGCAGCTCGGAAGACTCCGCAGACGATATCATCAGTATGAAGGACCTCAGGCACGAGCTGAAGGAGGTCGAGGAGAAGTTCCGCAAAGCGATGATCCTGAACGCGCAGTTGGACAATGATAAGGCGGCGCTCGCGTACCAGCTGGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAAGAGTACGCGCAGCTGCAGCGTGAGCACAAGGAGAAGTGCTCGTCGCACGAGCGGCTGAAGCGCGAGCACGCGGCGCTGGAGCGCGAGCTGGCGGGCGCGCGGGACGCGGTGCGCGCGAGGGACGCGGCCGCCGCCGCCGCGGGCCGCGCGTTCGTGGAGGCCGCGTCGCTGCCCGCGGGGGACGCGGGGGACGGGGGCGCGGCCGGCGTCGGCGCGGGCTTCGGCTGCGTGCCGCCGCTCGCGCTCGTCTCGCACTCCTCCGAGCAGCTGCTCAACGACGCCGGGGAGGGGACGCTGGACGTCCGGTTGCAGAAGCTGGTGAGTTCGAAGCAGGAGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCGGCTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGTCGCCGCGCACCACGACCGCGACCACGAGACTGAGCTGGAGGCGCTGCGCAAGTGCGTGTCGGAGGCGAAGGGGCGCGCGGCGCGGGCGGAGGCGGAGGCGGCGCTGGCGGCGGCGGGCGCGGCGCGGCTGGAGGCGCAGCTGGCGCGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCGCGAGGAGCAGCTCAAGGTGGAGCGCCGCCGGCTGCAGCGGGAGGCGCGGGAGGCGCTGAACCGAGTGGAGGAGCTGGAGACGGAGAACAGCCACCTGACCAAGCGGCTGGACAAGCTGAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGRRSKLATPDNSDEESGDAFTDGDFGDSDEDTIVEKNDNLKKGRLPLNETVNVEVKEPGHETCDKINGNHSVEHVNGQINPGTVNGFKNGDITESSSSSKDSIDDINGDQIAVETRRDSHSDNNPSIIGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRGGRTRLAVMSPAGLHSPRRSSEDSADDIISMKDLRHELKEVEEKFRKAMILNAQLDNDKAALAYQLELLKDRIEELHEEYAQLQREHKEKCSSHERLKREHAALERELAGARDAVRARDAAAAAAGRAFVEAASLPAGDAGDGGAAGVGAGFGCVPPLALVSHSSEQLLNDAGEGTLDVRLQKLVSSKQELESEVRKLKLRLNEERAARQNGVAAHHDRDHETELEALRKCVSEAKGRAARAEAEAALAAAGAARLEAQLARLRARQDHQDEREEQLKVERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00277378; iTF_00673524; iTF_01438000; iTF_00970426; iTF_00971389; iTF_01359771; iTF_00288067;
- 90% Identity
- iTF_01438000;
- 80% Identity
- -