Mvio004329.1
Basic Information
- Insect
- Megathymus violae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003671415.1
- Location
- PDGT01000001.1:2844089-2860206[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-58 3.6e-54 184.7 22.0 1 169 139 300 139 305 0.93 2 3 8.6e-10 2.4e-05 24.4 4.5 220 297 388 457 376 459 0.70 3 3 1 2.7e+04 -7.4 18.1 1 44 456 499 456 531 0.69
Sequence Information
- Coding Sequence
- ATGGGCAAACGGTCAAAATTAGCTACGCCGGACAACAGCGAAGAGGAAAGTGGTGATGCGTTTACTGACGGAGATTTTGGTGATTCTGACGAAGAAACCGTAGTGGAAAAAAGTGAGAACTCGAAGAAAGGTCGTCTGCCTCTAAATGAGACTGTAAACATAGACGTGAAAGAACCAGGTCACGATACCTGCTATAAAATAAAAGGAAATCCTTCAGTTGAACAAGTCAATGGACAAATTGATCCTAGCACCGTTATCGGGCATAAAAATGGAGACGTTACAGAATCCAGTAGTTCATCCAAAGACAGTATCGATGATATCAATAGAGATCATAATGCAGCGGAAACACGACGAGACTCACATTGCGAAAATAATCCATCAATAATTGGAATTCTCGGAGATCAGCAAAACCATGCGGAGCAGCGGCTGGCGGCGCGTCGGGCGGCGCGGGCTGAGGCGCGCGAGATTCGCATGCGTGAGTTGGAGCGTCAGCAGCGAGAACAGGAGGACCACGCCGACAAAGCGTACGACATGTACGCAGAGACGGTCGGTCGCAGCGGGCGCACGCGGCTGGCCGCCATGAGCCCCGGTGGCCTCCACTCGCCGCGTCGTAGCTCCGAGGACTCCGCAGATGACATCATCAGTATGAAGGATCTTAGGCACGAGCTGAAGGAAGTGGAGGAGAAGTTCCGTAAGGCCATGATACTGAACGCGCAACTGGACAACGACAAGGCTGCAATGGCGTACCAATTGGAGTTGCTCAAGGACCGGATAGAAGAGCTGCACGAGGAATACGCACAGCTGCAGCGGGAGCACAAAGAGAAGTGTTCGTCGCACGAGCGGCTCAAGCGCGAGCACGCGGCGCTGGAGCGCGAGCTGGCGGGCGCGCGGGATCGTCTCGCACACCTCCGAGCAGCTGCTCAACGACGCCGGAGAGGGGACGCTGGCATTGGCAAGGATGTTGAATTTTATAATCGTAATATCCGGTGTCCCTTATATGTGGTACCCACGTTACGGGACAATGGGAATTATCACCCAGCCACGCACACTCCCTTCTGCACGACCACGGGACCACGAGACCACGGCAGCTGCCACACGTCATGTCCGTCACAAGACTATACGTTATATGTTGCTCTACTTTATTCAACATCGTCGGGTGTATCTGCAGACGTCCGATTGCAAAAGTTGGTGAGCTCGAAGCAGGAGCTGGAGTCCGAGGTGCGCAAGCTGAAGCTGCGGTTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGTCGCCGCGCACCACGACCGCGACCACGAAACTGAGCTAGAAGCGATGCGCAAATGCGTGTCGGAGGCGAAGGGGCGGGCGGCGCGCGCGGAATCTGAGGCGGCGCTGGCGGCTGCGGGCGCGGCGCGGCTCGAGGCGCAGCTAGCGAGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCGGGAGGAGCAGCTCAAGGTGGAGCGTCGGCGGCTGCAGCGGGAGGCACGGGAAGCGCTGAACCGAGTGGAGGAGCTGGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCGGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGKRSKLATPDNSEEESGDAFTDGDFGDSDEETVVEKSENSKKGRLPLNETVNIDVKEPGHDTCYKIKGNPSVEQVNGQIDPSTVIGHKNGDVTESSSSSKDSIDDINRDHNAAETRRDSHCENNPSIIGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRSGRTRLAAMSPGGLHSPRRSSEDSADDIISMKDLRHELKEVEEKFRKAMILNAQLDNDKAAMAYQLELLKDRIEELHEEYAQLQREHKEKCSSHERLKREHAALERELAGARDRLAHLRAAAQRRRRGDAGIGKDVEFYNRNIRCPLYVVPTLRDNGNYHPATHTPFCTTTGPRDHGSCHTSCPSQDYTLYVALLYSTSSGVSADVRLQKLVSSKQELESEVRKLKLRLNEERAARQNGVAAHHDRDHETELEAMRKCVSEAKGRAARAESEAALAAAGAARLEAQLARLRARQDHQDEREEQLKVERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01082458;
- 90% Identity
- -
- 80% Identity
- -