Clyc004422.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- lrrfip2
- Assembly
- GCA_002930495.1
- Location
- MOOZ01000245.1:670258-687692[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.051 1.5e+03 -1.1 0.6 28 90 54 117 42 120 0.54 2 3 3.4e-77 9.7e-73 245.7 26.4 1 298 136 419 136 420 0.91 3 3 1 2.8e+04 -9.1 17.2 1 44 417 460 417 490 0.71
Sequence Information
- Coding Sequence
- ATGGGCAGGCGGTCGAAATTAGCTACGCCGGACAACAGCGAGGAAGAAAGCGGTGATGCTTTTACTGACGGCGATTTTGGTGACTCTGACGATGAAACGATAGTCCAACAGAGCGAGACCTCAAAAAAAGGTCGCTTGCCTGTCAATGAGACAGTAAACGCTGAACTCAAAGAGTCAAAAGATACATGTGACAATGTAAACGGGAATCAAGCAGCGGAACAAGACAATGGACATGTAAGTTCTGGCAGCGTTAACGGACTTACTAATGGTGATATAACAGAGTCTACTGATTCTTCCAAAGATAGTCTAACCAATGGAGATTGCAACAATATTTCAACAGATATACGGCGAGATTCACATTGTGATCCTTCGATAGTGGGAATTCTTGGCGATCAGCAAAACCATGCGGAGCAGCGTctggcggcgcggcgggcggcgcgtgcGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCGGACAAGGCGTACGACATGTACGCGGAGACGGTGGGTCGCGGCGGGCGCACGCGGCTTGCGGCGCTCAGCCCCGGCGGGCTGCACTCGCCAAGACGCAGCTCCGAGGACTCCGCGGACGACATCGTCAGCATGAAGGACCTGAGGCACGAGCTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCAGGCGTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCTCAGCTGCAGCGCGAGCACAAAGAGAAATGTTCCTCGTTGGAGCGGTTGCGTCGCGAGCACGCGGCGCTGGAGCGCGAGGTGGGCGCGGCGCGGGACGCGGTGCGCGCGCGCgacgcggcggcggcggcggcgggccgCGCCTTCGTGGAGGccagcgccgcgcccgccgcgcccgccgccggcTACGGCTGCGTGCCGCCGCTCGCGCTCGTCTCGCACCAGACCGAGCGGATGCTCAGTGATGCCGGGGAGGGGACGCTCGACGTGCGATTGGAGAAGCTGGTGAACTCGAAGCAGGAGCTGGAGTCGGAGGTGCGCAAGCTGAAGTTGCGGCTGAATGAGGAACGAGCGGCGCGGCAGAATGGCGTCGCAGCTCACCACGACCGCGATCATGAGAATGAATTGGAGGCGGCGCGCAAGGCGATGTCGGAGGCGAAGGGCCGCGCGGCGCgcgcggaggcggaggcggcgCTGCAGGCCGCCGCGCTGGCGCGCCTCGAGGCGCAGCTCGCCCGTCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCTGGAGCGCCGCCGTCTGCAGCGGGagGCAAGAGAAGCTCTGAACCGAGTTGAGGAGCTGGAGACGGAGAACAGCCACCTGACGAAGAGGTTGGACAAACTCAAGAACGCCAAGTCAGCGTTACTCAAGGACCTGTGA
- Protein Sequence
- MGRRSKLATPDNSEEESGDAFTDGDFGDSDDETIVQQSETSKKGRLPVNETVNAELKESKDTCDNVNGNQAAEQDNGHVSSGSVNGLTNGDITESTDSSKDSLTNGDCNNISTDIRRDSHCDPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRGGRTRLAALSPGGLHSPRRSSEDSADDIVSMKDLRHELKEVEEKFRKAMILNAQLDNDKAAQAYQLELLKDRIEELHEEYAQLQREHKEKCSSLERLRREHAALEREVGAARDAVRARDAAAAAAGRAFVEASAAPAAPAAGYGCVPPLALVSHQTERMLSDAGEGTLDVRLEKLVNSKQELESEVRKLKLRLNEERAARQNGVAAHHDRDHENELEAARKAMSEAKGRAARAEAEAALQAAALARLEAQLARLRARQDHQDEHEEQLKLERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01082458;
- 90% Identity
- iTF_01359771;
- 80% Identity
- -