Cpal003245.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- lrrfip2
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000034.1:4280120-4297701[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-75 1.9e-71 240.9 22.9 1 298 136 426 136 428 0.87 2 2 3 2e+04 -6.0 13.9 14 160 437 480 424 502 0.42
Sequence Information
- Coding Sequence
- ATGGGCAGGCGGTCGAAATTAGCCACGCCGGATAACAGCGAAGAAGAGAGTGGTGACGCTTTCACAGACGCCGACtttggtgattccgatgaagaAACCATAGTTGAACAGAATGATACGTCTAAAAAAGGACGATTGCCCGTCAATGAGACGATAAACGCACAAATAAAGCCACAGGGTCACGACACCTGCGATAAAGTAAACGGAAACCATTCAGCAGAGCAATTCAATGGTCATATTCAATCTGGAGCTGTAAATGGATTTAGAAATGGTGACCTCACAGAATCCAGTGGTTCATCCAAAGATAGTATCAACGGAGATCTCATCGCAGGGGACGTCCGACGCGATTCACATTGCGACAGTAATCCTTCTATAGTTGGGATTCTCGGCGATCAACAGAACCATGCGGAACagcggctggcggcgcggcgcgcggcgcgggcggaggCGCGCGAGATCCGCATGCGCGAGCTGGagcggcagcagcgcgagcaGGAGGACCATGCCGACAAGGCGTACGACATGTACTCGGGGGACTTCAAGCGAGACACGGTGACCCGCGGCACGCGCACCCGGCTCGGCGGCGTCAGCCCCGGGGGCGCGCTGCActcgccgcgccgcagctcagAGGACTCCGCCGACGATATCGTCAGCATGAAGGACCTGAGGCATGAGCTGAAGGAGGTCGAGGAGAAGTTCCGCAAAGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCACGCCTACCAGCTGGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAATACGCGCAGCTTCAGCGGGAACATAGAGAGAAATGCTCCTCCCACGAGCGTCTGTCGCGCGAGCACGCGCTGCTCGAGCGCGAGGTGGGCATGGCGCGGgacgcggtgcgcgcgcgcgacgcggccgccgccgccgcgggccgcgcgttcgtggaggcggcggcggcgggcgacgcgtgcgcgggcgccggcttCGGCGCGGtgccgccgctcgcgctcgtCTCGCACTCCTCCGAGCGGCTGCTCAACGACGCCGGGGAGGGCACGCTGGACGTGCGGTTGCAGAAGCTGGTCAGCTCGAAGCTCGAGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCGGCTGAACGaggagcgcgccgcgcgccagaaCGGCGTGTCCGCCGCGCACGACCGCGACCACGAGACCGAGCTGGAGAGCTTGCGCAAGTCGGTGTCGGAGGCgaaggcgcgggcggcgcgcgcggaggCCGAGGCGACGCTGCAGGCGGCGGCCGTCGCGCGGCTGGAGACGCAGGTGgcccggctgcgcgcgcgccgcgaccaCCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGCCTGCAGAGAGAGGCAAGGGAAGCGCTGAACCGGGTTGAGGAGTTGGAGACGGAGAACAGCCACCTGACGAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCGGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGRRSKLATPDNSEEESGDAFTDADFGDSDEETIVEQNDTSKKGRLPVNETINAQIKPQGHDTCDKVNGNHSAEQFNGHIQSGAVNGFRNGDLTESSGSSKDSINGDLIAGDVRRDSHCDSNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSGDFKRDTVTRGTRTRLGGVSPGGALHSPRRSSEDSADDIVSMKDLRHELKEVEEKFRKAMILNAQLDNDKAAHAYQLELLKDRIEELHEEYAQLQREHREKCSSHERLSREHALLEREVGMARDAVRARDAAAAAAGRAFVEAAAAGDACAGAGFGAVPPLALVSHSSERLLNDAGEGTLDVRLQKLVSSKLELESEVRKLKLRLNEERAARQNGVSAAHDRDHETELESLRKSVSEAKARAARAEAEATLQAAAVARLETQVARLRARRDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01082458;
- 90% Identity
- -
- 80% Identity
- -