Murs021219.1
Basic Information
- Insect
- Megathymus ursus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003671415.1
- Location
- PDGT01000001.1:2844089-2860206[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-61 5.2e-57 193.8 34.4 1 297 139 400 139 402 0.84 2 2 0.072 1.6e+03 -1.6 12.4 1 45 399 443 399 466 0.76
Sequence Information
- Coding Sequence
- ATGGGCAAACGGTCAAAATTAGCTACGCCGGACAACAGCGAAGAGGAAAGTGGTGATGCGTTTACTGACGGAGATTTTGGTGATTCTGACGAAGAAACCGTAGTGGAAAAAAGTGAGAACTCGAAGAAAGGTCGTCTGCCTCTAAATGAGACTGTAAACATAGACGTGAAAGAACCAGGTCACGATACCtgctataaaataaaaggaaatccTTCAGTTGAACAAGTCAATGGACAAATTGATCCTAGCACCGTTATCGGGCATAAAAATGGAGACGTTACAGAATCCAGTAGTTCATCCAAAGACAGTATCGATGATATCAATAGAGATCATAATGCAGCGGAAACACGACGAGACTCACATTGCGAAAATAATCCATCAATAATTGGAATTCTCGGAGATCAGCAAAACCATGCGGAGCAGCGGCTGGCGGCGCGTCGGGCGGCGCGGGCTGAGGCGCGCGAGATTCGCATGCGTGAGTTGGAGCGTCAGCAGCGAGAACAGGAGGACCACGCCGACAAAGCGTACGACATGTACGCAGAGACGGTCGGTCGCAGCGGGCGCACGCGGCTGGCCGCCATGAGCCCCGGTGGCCTCCACTCGCCGCGTCGTAGCTCCGAGGACTCCGCAGATGACATCATCAGTATGAAGGATCTTAGGCACGAGCTGAAGGAAGTGGAGGAGAAGTTCCGTAAGGCCATGATACTGAACGCGCAACTGGACAACGACAAGGCTGCAATGGCGTACCAATTGGAGTTGCTCAAGGACCGGATAGAAGAGCTGCACGAGGAATACGCACAGCTGCAGCGGGAGCACAAAGAGAAGTGTTCGTCGCACGAGCGGCTCAAGCGCGAGCACGCGGCGCTGGAGCGCGAGCTGGCGGGCGCGCGGGATCGTCTCGCACACCTCCGAGCAGCTGCTCAACGACGCCGGAGAGGGGACGCTGGGTCAGTCACGTTACCTGCTTACCACGTTTATAGTTCTGCTAAAGCGCAACACGTCCGATTGCAAAAGTTGGTGAGCTCGAAGCAGGAGCTGGAGTCCGAGGTGCGCAAGCTGAAGCTGCGGTTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGTCGCCGCGCACCACGACCGCGACCACGAAACTGAGCTAGAAGCGATGCGCAAATGCGTGTCGGAGGCGAAGGGGCGGGCGGCGCGCGCGGAATCTGAGGCGGCGCTGGCGGCTGCGGGCGCGGCGCGGCTCGAGGCGCAGCTAGCGAGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCGGGAGGAGCAGCTCAAGGCACGGGAAGCGCTGAACCGAGTGGAGGAGCTGGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCGGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGKRSKLATPDNSEEESGDAFTDGDFGDSDEETVVEKSENSKKGRLPLNETVNIDVKEPGHDTCYKIKGNPSVEQVNGQIDPSTVIGHKNGDVTESSSSSKDSIDDINRDHNAAETRRDSHCENNPSIIGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRSGRTRLAAMSPGGLHSPRRSSEDSADDIISMKDLRHELKEVEEKFRKAMILNAQLDNDKAAMAYQLELLKDRIEELHEEYAQLQREHKEKCSSHERLKREHAALERELAGARDRLAHLRAAAQRRRRGDAGSVTLPAYHVYSSAKAQHVRLQKLVSSKQELESEVRKLKLRLNEERAARQNGVAAHHDRDHETELEAMRKCVSEAKGRAARAESEAALAAAGAARLEAQLARLRARQDHQDEREEQLKAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01082458;
- 90% Identity
- -
- 80% Identity
- -