Tact010496.1
Basic Information
- Insect
- Thymelicus acteon
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_951805285.1
- Location
- OX638217.1:19248999-19266220[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.18 6.1e+03 -2.9 0.2 62 83 90 111 54 121 0.53 2 3 8.8e-77 3e-72 244.4 21.5 1 291 137 423 137 427 0.86 3 3 1 3.5e+04 -5.9 17.9 1 44 428 471 428 502 0.70
Sequence Information
- Coding Sequence
- ATGGGTAGAGGGTCCAAATTAGCTACGCCAGACAACAGCGACGAAGAAAGTGGTGAAGCATTTACTGACGGAGATTTTGGTGACTCTGACGAAGATACCATGGTAGAAAAGAATGACAACTTAAAGAAAGGACGCTTGCCCCTCAATGAGACTGTAAACGTCGAAGTAAAGGAACCAGATCACGACACCTGCAGCAAAATAAACGGAAATCATTCAGTTGAACATGTCAATGGACAAATTAAACTTGGCACTGTTAACGGGCTTAAAAATGGAGACATAACAGCATCTAGTAGTTCATCTAAAGATAGTATAGAGGATATCAATAGTGATCAGTTTGCAGCGGAAGCACGACGAGATTCACACAGCGATCCTTCAATAATTGGAATTCTTGGAGATCAGCAAAACCATGCGGAGCAGCGgctggcggcgcggcgcgcggcgcgggcggAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCCTACGACATGTACACGGAGACGGTGGGGCGCGGCGGCCGCACGCGGCTGGCGGCCATGAGCCCCGCGGGGCTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGCCGATGACATCATCAGCATGAAGGACCTCAGGCACGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCCGCGCACGCCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGTGAGCATAAGGAGAAGTGTTCGTCGCACGAGCGTTTGAAGCGCGAGCACGCGGCGCTGGAGCGTGAGCTGGCGGGCGCGCGGGACGCGGTGCGCGCGCGggacgccgccgccgccgccgccggccgCGCCTTCGTGGAGGCCGCGTCGCTGCCCGCGGGGGACGGGGCGGACGGCGGCGGGGCGGAGGGCGTCGGCCAGGGCTTCGGCTCCGTGCCGCCGCTCGCGCTCGTCTCGCACTCCTCCGAGCAGCTGCTCAATGATGCCGGGGAAGGGACGCTGGACGTCCGGTTGCAGAAGCTGGTGAGCTCGAAGCAGGAGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCGGCTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGTGGCCGCGCACCACGACCGCGACTACGAGACTGAGCTGGAGACGCTCCGCAAGCAAGTGTCGGAGGCGAAGGGGCGCGCGGCGCGTGCGGAGGCGGaggcggcgctggcggcggcgggcgcggcgcggcTGGAGGCGCAGCTGGCGCGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCGCGAGGAGCAGCTCAAGGTGGAGCGCCGCCGGCTGCAGCGGGAGGCGCGGGAGGCGCTGAACCGAGTGGAGGAGCTGGAGACGGAGAACAGCCACCTGACCAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGRGSKLATPDNSDEESGEAFTDGDFGDSDEDTMVEKNDNLKKGRLPLNETVNVEVKEPDHDTCSKINGNHSVEHVNGQIKLGTVNGLKNGDITASSSSSKDSIEDINSDQFAAEARRDSHSDPSIIGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTETVGRGGRTRLAAMSPAGLHSPRRSSEDSADDIISMKDLRHELKEVEEKFRKAMILNAQLDNDKAAHAYQLELLKDRIEELHEEYAQLQREHKEKCSSHERLKREHAALERELAGARDAVRARDAAAAAAGRAFVEAASLPAGDGADGGGAEGVGQGFGSVPPLALVSHSSEQLLNDAGEGTLDVRLQKLVSSKQELESEVRKLKLRLNEERAARQNGVAAHHDRDYETELETLRKQVSEAKGRAARAEAEAALAAAGAARLEAQLARLRARQDHQDEREEQLKVERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01082458;
- 90% Identity
- iTF_01082458;
- 80% Identity
- -