Ssim009607.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949699795.1
- Location
- OX453063.1:2001828-2021101[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.098 3e+03 -2.0 1.3 28 88 54 115 37 120 0.50 2 3 1.4e-77 4.3e-73 247.0 26.3 1 298 136 419 136 420 0.90 3 3 1 3.1e+04 -8.9 16.9 1 44 417 460 417 484 0.72
Sequence Information
- Coding Sequence
- ATGGGCAGGCGGTCGAAATTAGCTACACCGGACAACAGCGAAGAAGAAAGTGGTGATGCATTTACTGACGGCGATTTTGGTGACTCTGATGATGAAACTATAGTCCAACAGAGCGAGACCGCAAAGAAAGGTCGATTGCCTGTCAATGAGACAGTAAACGCTGAACTTAAGGAATCAGAAGATACATGCGACAATGTAAACGGCAGTCAATCCGTGGAGCAAATCAATGGACATATAAAATCTGGCAGCGTTAATGGACTTACAAATGGTGATATAACAGAGTCTAGTGATTCGTCCAAAGATAGTATAACCAATGGAGATTGCAATAACATTTCATCAGATACACGACGAGATTCACATTGTGATCCTTCGATAGTTGGAATTCTTGGCGATCAGCAAAACCATGCGGAGCAGCGTTTGGCGGCGCGTCGCGCGGCGCGTGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCGTATGACATGTACGCGGAGACGGTGGGTCGCGGCGGACGCACGCGGCTGGCGGCGCTGAGCCCCGGCGGGCTGCACTCACCGCGGCGCAGCTCCGAGGACTCCGCGGACGACATCGTCAGCATGAAGGACCTGAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAAGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCAGGCCTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGGGAGCACAAAGAAAAGTGCTCGTCACACGAGCGTCTCCGTCGCGAGCACGCGGCGCTGGAGCGCGACGTGGCGGCGGCGCGGGACGCGGTGCGCGCGCGCgacgcggcggcggcggcggccggcCGCGCCTTCGTGGAGGCGGCCGCCGCGCCCGACACGCCCGCCGCCGGCTACGGCTGCGTGCCGCCGCTCGCGCTCGTCTCGCACCAGACCGAGAAGCTGCTCAGCGACGCTGGGGAGGGGACGCTTGACGTGCGGTTGGAGAAGCTGGTGAACTCGAAGGCGGAGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCGGCTGAACGAGGAGCGCGCGGCCAGACAGAACGGCGTCGCCGCGCACCACGACCGGGATCACGAGAATGAGTTGGAGGCGGCGCGCAAGGCTATGTCGGAGGCGAAGGGTCGCGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGcaggcggcggcgctggcgcgGCTGGAGGCGCAGCTGGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCTGGAGCGCCGCCGGCTGCAGCGGGAGGCAAGAGAAGCTCTGAACCGAGTTGAGGAGCTGGAGACGGAGAACAGCCACCTGACCAAGCGGCTGGACAAACTCAAGAACGCCAAGTCAGCGTTACTCAAGGACCTGTGA
- Protein Sequence
- MGRRSKLATPDNSEEESGDAFTDGDFGDSDDETIVQQSETAKKGRLPVNETVNAELKESEDTCDNVNGSQSVEQINGHIKSGSVNGLTNGDITESSDSSKDSITNGDCNNISSDTRRDSHCDPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRGGRTRLAALSPGGLHSPRRSSEDSADDIVSMKDLRHELKEVEEKFRKAMILNAQLDNDKAAQAYQLELLKDRIEELHEEYAQLQREHKEKCSSHERLRREHAALERDVAAARDAVRARDAAAAAAGRAFVEAAAAPDTPAAGYGCVPPLALVSHQTEKLLSDAGEGTLDVRLEKLVNSKAELESEVRKLKLRLNEERAARQNGVAAHHDRDHENELEAARKAMSEAKGRAARAEAEAALQAAALARLEAQLARLRARQDHQDEHEEQLKLERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01082458;
- 90% Identity
- iTF_00288067;
- 80% Identity
- -