Mlig008015.1
Basic Information
- Insect
- Megachile ligniseca
- Gene Symbol
- lola
- Assembly
- GCA_945859565.1
- Location
- CAMAOB010000048.1:322284-325273[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-16 6.6e-13 48.5 0.0 2 42 372 413 371 426 0.95
Sequence Information
- Coding Sequence
- ATGTCGATGCagcagttttgtttacgatggaacaaccatcaaccaaattttatttctgtattttcaagtttgttgaacaatgaaaccttagtagatgtaacgttggctgccgaagggagacatcttcaggcacataaagttgtattgtccgcgtgtagtacatattttcagtcattgtttactgtgaatccatgccaacatccaattgtaatattaaaagatgtcaaattctctgatttaaaaatcatggttgactttatgtactatggagaagtgaacatatcacaggatcaattaccatcaattataaagACTGCAGAGAGTTTAAAAATAAAAGGGCTTGCAGAAATGCATACTGCTTCTTTAACCAAATGGCCAAGTGGTGAACCGGGGGGAGGAGATCGTGGTGAATCTTGTTCACCCAGTCCATCTCCGTTATCTCCATCTTTTAGAAGAAAGAGGCTAAGAAAATCATCTACAGGCTCCACATCTGGGTCTGGTGATAAACCAGAGGAAATGAATGAAATCACATTAGTTGCTACTAATATTGTAAAACCGGAACCGTTGATAGTTTCACAAGAAAGTGGTGAGAGCCTAAGAAGACCAATAAATACTAGTACTGAATCTCAAGGAAGCATAGATGAAGATCAAATATCCATTATGAGCAACATGGAGAACAGTTCTGCAACAACACCGGCACAAAGCGATGGTTCACTCCAAGATGTGAGTCAACAATCAGGAGGAAATGTGGCACAGAGTTCACTTTCTTCGCAACCACCTGCACATCAAGGATTACAATGGACTATTATGGAGCATACATATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCAGCTTTTACCACGCCCGAAATAACAGCTTCCTCGGCAATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTAGCAGTTGCGCCCTGACGAATTATCCGAACTCCTCCCACGGGACGTTGCAGCACGCATCGTCAGGCGGGCCTTCACCGTCGACACAGTGTCCCAGTAACTGCCAGAGCCCTTGTGCCAGTCCGCAGACCGCAATTAAGAGGAAACGATCGACGAATCCGCAGGCGGACGAGAACTTTATCAGGGCGTTAGACGCAGTCCGTTACGGTGGTATAGGGTTCTGTAAAGCAGCCAGGATGTTCGGCGTGAACAATCGAACACTTTGGCTCGAGTATAAAAAACGTGGTTACCCGAACAACCGACCGAGCTTGAAGTCGAGGGTCAAGCAAGAAGTGAATTCCTCGCCGCCCCCAGCCCAGTCGACGCAACCGGTCAATTCGCAGAGCCCCACACCGATGGGACCTCCCACCACACCACACAGTACACACAATACCCACAGCACGCATACCATGCTGACCACTCACAGTCCTCATACGATGTTAAGTGGTTACATAGATAGTAGGCATACAGATTATGCGTTGCCCAGCACCACGATGCCGATCAATTTACACGGCGTTAACTATAACGCGATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGEPGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDKPEEMNEITLVATNIVKPEPLIVSQESGESLRRPINTSTESQGSIDEDQISIMSNMENSSATTPAQSDGSLQDVSQQSGGNVAQSSLSSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSAISDQYSGTSTTGSSCALTNYPNSSHGTLQHASSGGPSPSTQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAQSTQPVNSQSPTPMGPPTTPHSTHNTHSTHTMLTTHSPHTMLSGYIDSRHTDYALPSTTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963276; iTF_00961744; iTF_00961911; iTF_01235105; iTF_01234947; iTF_01233740; iTF_01234426; iTF_01234267; iTF_01233567; iTF_00866626; iTF_00865925; iTF_00866098; iTF_00866784; iTF_00770469; iTF_01475366; iTF_00253481; iTF_00254441; iTF_01130729; iTF_01475562; iTF_01130924; iTF_01473837; iTF_00255182; iTF_00252175; iTF_00253681; iTF_01199505; iTF_00251986; iTF_00770290; iTF_01198771; iTF_00254997; iTF_00252919; iTF_01474040; iTF_01198585; iTF_00252731; iTF_01199323; iTF_00254237; iTF_00294593; iTF_00293636; iTF_00293832; iTF_00293066; iTF_00294385; iTF_00292858; iTF_00291452; iTF_00291647; iTF_00295365; iTF_00296905; iTF_00296690; iTF_00295161; iTF_00292201; iTF_00292355; iTF_01255782; iTF_01255459; iTF_00397418; iTF_00397194; iTF_00840972; iTF_00841187; iTF_01512109; iTF_01512260; iTF_00687088; iTF_00687300; iTF_01364753; iTF_01364554; iTF_00316692; iTF_00773716; iTF_00773905; iTF_00393685; iTF_00393517; iTF_01513558; iTF_01513394; iTF_00223961; iTF_00223792; iTF_00223105; iTF_00223277; iTF_00224473; iTF_00224634; iTF_01090074; iTF_01089914; iTF_01498298; iTF_01498115; iTF_00397982; iTF_00398194; iTF_00863871; iTF_00864059; iTF_01419071; iTF_01418920;
- 90% Identity
- iTF_01424286;
- 80% Identity
- iTF_00963276; iTF_00961744; iTF_00961911;