Psmy003687.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- lola
- Assembly
- GCA_030142225.1
- Location
- JARQST010000282.1:656802-660457[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-16 6e-13 48.4 0.0 2 42 383 424 382 437 0.95
Sequence Information
- Coding Sequence
- ATGTCGATGCAACAGTTTTGTTTGCGCTGGAACAATCATCAGCCCAACTTTATATCGGTTTTCTCCAGTCTATTGAATAATGAGACTCTGGTGGATGTCACATTGGCTGCTGAGGGAAGACACTTACAGGCACATAAAGTTGTCTTATCTGCGTGTAGCACATATTTTCAGTCGCTCTTTACTGTCAATCCCTGTCAGCATCCCATTGTCATTCTTAAGGATGTTAAATTCTCTGATCTCAAAATCATGGTAGATTTTATGTACTATGGAGAAGTCAATGTCTCGCAGGATCAATTACCATCGATtattaaaACTGCAGAAAgcctaaaaataaaaggtttAGCAGAGATGCACACAGCCAGTTTAACAAAATGGCCAAGCGGCGGGAGTGAACCCGGCGGAGGAGACAGAGGTGAATCATGTTCACCAACACCATCACCACTGTCACCATCGTTCCGTAGAAAACGACTGCGCAAAACTTCCACAGGGTCAACCTCGGGCTCTGGAGAGAAGCAAGAGGAGATAAATGAGATCACTTTGGTGGCGACAAACGTGGTAAAGCCTGAACCATTAATCGTCTCGCAGGAAAGCGGAGAAAATCTAAGAAGACCACTGAACACCAGTACGGAGTCCCAGGGCAGTATCGATGAAGACCAAATATCTATTATGAGTAACATGGAGAGTAGTTCAGCCACTACTCCGGCACAGAGTGAAGGTTCAATGCAGGATGTCAGCAGTCAACAGTCTGGTTCAAATGTTGGACAAAGTTCAATCCCACCTCAACCACCAGCTCATCAAGGATTGCAATGGACAATAATGGAGCACACGTATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCATCCTCGGCGTTCACCACGCCCGAAATATCCGGGAGCTCGTCGTCGGCGATCGGCGAGCAGTACTCCGGTACTAGCACCACTGGTTCCAGCTGCGCCCTCACGAGCTATCCGAACTCCTCCCACGGCACGTTGCAGCATacctcctcgtcgtcgtcgtcatcgtcgagCGGCCCGACCCCATCGACACAGTGTCCAAGTAACTGTCAGAGTCCTTGCGCCAGCCCACAGACAGCAATCAAGAGGAAGCGCTCGACGAATCCTCAGGCTgacgaaaattttatcaggGCGCTGGACGCCGTTCGTTATGGCGGCATTGGATTCTGCAAGGCGGCCAGGATGTTCGGAGTCAACAACCGGACCCTCTGGCTCGAGTACAAGAAGAGGGGCTATCCGAACAATCGTCCCAGCCTTAAGTCCCGGGTCAAACAGGAAGTGAACTCCTCGCCACCGCCTGCACCTTCTACTCAGCCGGTCAACTCTCAAAGTCCAACGCCGATGGGACCACCAACCACTCCTCATAGTAGTCACAATACTCATAGCACTCACACTATGCTCACCACGCATAGTCCGCATGCTATGCTTAGCGGATACATTGACAGCAGGCATACCGATTATGCTCTGCAGAGCAGCAGTATGCCTATCAATTTACATGGGGTCAATTATAACGCCATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGGSEPGGGDRGESCSPTPSPLSPSFRRKRLRKTSTGSTSGSGEKQEEINEITLVATNVVKPEPLIVSQESGENLRRPLNTSTESQGSIDEDQISIMSNMESSSATTPAQSEGSMQDVSSQQSGSNVGQSSIPPQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEISGSSSSAIGEQYSGTSTTGSSCALTSYPNSSHGTLQHTSSSSSSSSSGPTPSTQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPSTQPVNSQSPTPMGPPTTPHSSHNTHSTHTMLTTHSPHAMLSGYIDSRHTDYALQSSSMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963108;
- 90% Identity
- iTF_01424286;
- 80% Identity
- iTF_01130924;