Bpas008235.1
Basic Information
- Insect
- Bombus pascuorum
- Gene Symbol
- lola
- Assembly
- GCA_905332965.1
- Location
- HG995270.1:9046073-9049916[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-16 6.6e-13 48.5 0.0 2 42 374 415 373 428 0.95
Sequence Information
- Coding Sequence
- ATGTCGATGCAACAGTTCTGTTTGCGGTGGAACAATCATCAACCAAATTTTATTTCGGTGTTTTCGAATTTGTTGAACAATGAGACTTTGGTGGATGTGACATTAGCTGCCGAAGGCAGACACCTTCAGGCACACAAAGTTGTTCTGTCTGCATGCAGCACATATTTTCAATCATTGTTTACTGTGAATCCATGTCAACATCCAATCGTCATATTAAAGGATGTAAAATTCTCTGACTTAAAAATCATGGTTGACTTTATGTACTATGGTGAAGTAAACATATCACAGGATCAGTTACCATCTATCATAAAGACCGCAGAGAGTTTAAAAATAAAAGGACTCGCAGAAATGCACAGTGCTTCTTTAACCAAGTGGCCAAGTGGTAGTAGTGAACCTGGAGGAGGAGATCGTGGGGAATCTTGTTCACCTAGCCCTTCTCCATTATCACCATCCTTTCGTAGAAAGAGATTAAGGAAATCATCAACAGGATCAACATCTGGATCTGGCGAGAAACCTGAAGAAATGAATGAAATTACTTTAGTTGCCACTAATATTATAAAACCAGAACCGTTGATAGTTTCACAAGAAGGTAGCGAAAGTCTAAGAAGACCTGTTAATGCTAGTACTGAATCTCAAGGAAGTATTGACGAAGATCAAATATCGATCATGAGTAACATGGAGAATAGTTCGGCAACGACTCCCGCACAAAGTGATGGCTCAATACAAGATGTGAGTCAACAGTCAGGAGGAAATGTTGCACAGAGTACAGTTTCTTCACAACCACCCGCACATCAAGGATTGCAATGGACTATTATGGAGCATACATATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCAGCTTTTACCACGCCCGAAATAACAGCTTCTTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGTTGCGCCCTGACGAATTATCCGAACTCCTCGCACGGGACATTGCAGCACGCATCGTCGAGCGGCCCATCACCGTCGGCACAGTGCCCAAGTAACTGCCAGAGTCCTTGCGCCAGTCCGCAGACCGCAATTAAAAGGAAACGATCGACAAATCCGCAGGCAGACGAGAATTTTATCAGGGCATTAGACGCCGTTCGATACGGCGGTATAGGTTTTTGTAAAGCAGCCAGGATGTTCGGCGTGAACAATCGAACACTTTGGCTGGAATACAAAAAGCGTGGTTACCCGAACAATCGACCGAGCTTGAAATCGAGGGTCAAGCAAGAAGTGAATTCCTCACCACCGCCAGCCCCGTCGGGGCAGCCGGTTAATTCACAGAGTCCTACGCCCATGGGCCCTCCCACCACCCCACACAGTACACACAATACCCACAGCACGCATACCATGCTAACCACTCATAGTCCTCATACGATGTTAAGTGGTTACATCGATAGCAGGCATACGGATTACGTATTGCCCAGCACTACAATGCCAATCAATTTACACGGCGTTAACTACAACGCGATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHSASLTKWPSGSSEPGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGEKPEEMNEITLVATNIIKPEPLIVSQEGSESLRRPVNASTESQGSIDEDQISIMSNMENSSATTPAQSDGSIQDVSQQSGGNVAQSTVSSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSCALTNYPNSSHGTLQHASSSGPSPSAQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPSGQPVNSQSPTPMGPPTTPHSTHNTHSTHTMLTTHSPHTMLSGYIDSRHTDYVLPSTTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963108;
- 90% Identity
- iTF_01424286;
- 80% Identity
- iTF_00224634;