Tatt001177.1
Basic Information
- Insect
- Trypoxylon attenuatum
- Gene Symbol
- lola
- Assembly
- GCA_963989405.1
- Location
- OZ022488.1:9417008-9427645[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-16 7.2e-13 48.2 0.0 2 42 464 505 463 508 0.94
Sequence Information
- Coding Sequence
- ATGTCAATGCAACAGTTCTGCTTGCGGTGGAACAATCACCAGCCAAATTTTATCTCCGTCTTTTCGAACCTGTTGAACAACGAAACTTTGGTGGACGTTACACTTGCCGCAGAAGGAAGACACCTCCAGGCACATAAAGTGGTACTCTCAGCGTGCAGTACCTACTTTCAATCGTTATTTACTGTCAATCCATGTCAACATCCGATTGTTATTTTAAAAGACGTAAAGTTTTCCGATTTAAAAATCATGGTTGACTTTATGTATTACGGAGAGGTAAACGTGTCCCAAGACCAGCTACCATCAATTATAAAGACTGCAGAAAGCTTGAAGATAAAAGGTCTTGCAGAAATGCATACAGCATCTTTAACGAAATGGCCGAGTGGCAGTACAGAGCCTGGTGGAGGTGATCGAGGTGAATCTTGTTCGCCGAGTCCATCCCCATTATCCCCTTCTTTTCGACGGAAGAGATTACGAAAATCATCAACAGGATCAACGTCTGGGTCAGGAGACAAACCGGAAGAAATGAACGAAATTACATTAGTAGCTACCAATATTGTTAAACCCGAGCCATTAATAGTGTCGCAAGAAGCAGGCGAGAATTTACGAAGGCCAGTGAACACGAGTACCGAATCTCAAGGAAGCATTGACGAGGATCAAATATCAATTATGAGTAACATGGAAAACAGTTCTGCAGCGACCCCAGCGCAAAGCGATGGTTCCATACAAGATGTAAGTCAACAGTCGGGGAGCAATATAGGCCAGAGTTCTGTTTCCTCGGAACCACCATCGCATCAAGATCCAAACAAATGGCAGGATGAGACCTATGGACGTAATATGCCTAACGCAGATGATGCTAGAGATCTCAAAACCACACTGAATCACGAAATTAAGAGGAAAGAAGGTCAAGTGCGTCGAGTAAGGCGAAATTGCAAGGGATGTTACGACAAAAATGTTAAACAATTTGGTAGTCAATTCGCGAGAAAATCTACCAAAAAAGTGGCAACATTTTGCGACGATTGTCCTGGGAAACCTCATCTTTGTTTACCGTGTTACAATGTTAGACATCGATTGCAATGGACTATAATGGAGCACACATATCCACGTTTCGCTCTGTCTTCGTGTCAAACGAATCTGTCGATTCAAGCGTCATCAGCTTTTACGACACCCGAAATAACAGCGTCCTCAAGCATCAGCGATCAGTATTCTGGTACCAGCACAACTGGTTCCAGCTGTGCACTGACGAATTACCCGAACTCCTCTCACGGTACGCTGCAGCATGCATCGTCAAGCGGCCCGTCGCCATCGGCACAGTGTCCCAGTAACTGCCAGAGTCCCTGCGCCAGCCCTCAGACCGCCGTTAAGAGGAAGCGTTCGTCGCATCCACAAGCGGACGAGAACTTTATTCGTGCACTTGATGCCGTACGATACGGTGGTATAGGGTTCTGCAAAGCAGCCAGGATGTTTGGTGTCAACAATCGAACACTTTGGCTTGAATATAAAAAACGCGGTTATCCAAACAATCGGCCAAGTTTGAAATCTCGTGTTAAACAGGAGGTGAATTCTTCCCCACCACCAGCCCCAGCGACACAAGCTGTAAATTCTCAGAGTCCCACGCCAATGGGACCACCTTCAACGCCACATAGCAGTCACAATACACATAGCACTCATACTATGCTCACTACTCACAGTCCTCATACCATGCTCAGTGGTTATATCGATAGTAGGCATACGGATTATGCGTTACCAAGTACTACGATGCCCATCAATTTGCACGGTGTTAATTATAATGCAATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSNLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSTEPGGGDRGESCSPSPSPLSPSFRRKRLRKSSTGSTSGSGDKPEEMNEITLVATNIVKPEPLIVSQEAGENLRRPVNTSTESQGSIDEDQISIMSNMENSSAATPAQSDGSIQDVSQQSGSNIGQSSVSSEPPSHQDPNKWQDETYGRNMPNADDARDLKTTLNHEIKRKEGQVRRVRRNCKGCYDKNVKQFGSQFARKSTKKVATFCDDCPGKPHLCLPCYNVRHRLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSSISDQYSGTSTTGSSCALTNYPNSSHGTLQHASSSGPSPSAQCPSNCQSPCASPQTAVKRKRSSHPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPATQAVNSQSPTPMGPPSTPHSSHNTHSTHTMLTTHSPHTMLSGYIDSRHTDYALPSTTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963108;
- 90% Identity
- iTF_01498298;
- 80% Identity
- iTF_01498298;