Tcly018239.1
Basic Information
- Insect
- Tetragonula clypearis
- Gene Symbol
- lola
- Assembly
- GCA_010645135.1
- Location
- WIUT01000700.1:18026-21190[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-16 9.4e-13 48.4 0.0 2 42 376 417 375 420 0.94
Sequence Information
- Coding Sequence
- ATGTCGATGCAACAGTTCTGTCTGCGATGGAACTATCATCAgccaaatttcatttcggtGTTCTCGAATTTGTTGAACAATGAGACACTGGTGGACGTTACGTTGGCTGCCGAAGGCAAGCAACTTCAGGCGCACAAAGTTGTTCTGTCTGCGTGCAGCACGTATTTCCAGTCATTGTTTACTGTGAATCCGTGTCAACACccaattgttatattaaagGATGTGAAATTCtcagatttgaaaattatggTTGACTTTATGTACTATGGCGAGGTAAACATATCAGAGGATCAACTACCATCTATTATAAAGACTgcagaaagtttaaaaataaaagcactCGCAGAAATGAACACTACTTCGTTAACCAAATGGCCACGCGGTACCAGTGAAAATGAAGGAGGAGATCGTGGGGAATCTTGTTCGCCAACTCCTTCTCCATTGTCACCGTCTTTTCGTAGAAAGAGATTAAGGAAATCGTCCACAGGATCAACATCTGGATCTGGCGAAAAACCAgaagaaatgaatgaaatcacTTTAGTTGCTACTAATATTGTAAAACCAGAACCATTGATAGTTTCgcaagaaaataatgaaaatctaAGGAGACCTGTTAATACCAATACTGAATCTCAAGGCAGCATTGACGAGGATCAAATATCAAttaTGAGTAACATggataataattcaacaacaGCAACACCAGCACAAAACGATGGTTCGATACAAGATATGAGTCAACAATCAGGAGGGAATGTAACGCAAAGTTCAGTTTCTTCACAGCCACCTGCACATCAAGGATTGCAATGGACTATTATGGAGCATACATATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCAGCTTTTACTACGCCCGAAATAACAGCTTCCTCGACCATCAGCGATCAGTACTCTGGTACCAGCACGACTGGTTCCAGCAGTTGCGCCCTGACGAATTACTCGAACTCTCCGCACGGGACGTTGCAGCACACGTCGCCCAGCGGATCGACACCGTCGACACAGTGCCCGAGTAACTGCCAGAGTCCCTGCGCCAGTCCGCAGGCCGCAATTAAGAGGAAACGATCGACAAACCCGCAGGCAGACGAGAACTTTATCAGAGCGTTAGACGCCGTTCGATATGGCGGCATAGGTTTCTGTAAAGCGGCCAGGATGTTCGGCGTGAACAATCGAACACTTTGGCTGGAGTACAAAAAGCGTGGTTACCCGAACAATCGACCGAGCTTGAAATCGAGGGTCAAGCAAGAAATGAATTcctcgccgccgccgccagcCCCGTCCGCGCAACCGGTTAATTCGCAGAGCCCAACGCCGATGGGACCTCCCACCACTCCGCACAGTACACACAATACCCACAGCACGCATACCATGCTGACCACCACACATCCTCATACGATGTTAAGTGGTTACATCGATAGCAGGCATACGGATTACGCATTGCCCAGTCCTACAATGCCAATCAATTTACATGGCGTGAACTACAATGCGATGTGA
- Protein Sequence
- MSMQQFCLRWNYHQPNFISVFSNLLNNETLVDVTLAAEGKQLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNISEDQLPSIIKTAESLKIKALAEMNTTSLTKWPRGTSENEGGDRGESCSPTPSPLSPSFRRKRLRKSSTGSTSGSGEKPEEMNEITLVATNIVKPEPLIVSQENNENLRRPVNTNTESQGSIDEDQISIMSNMDNNSTTATPAQNDGSIQDMSQQSGGNVTQSSVSSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYSGTSTTGSSSCALTNYSNSPHGTLQHTSPSGSTPSTQCPSNCQSPCASPQAAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEMNSSPPPPAPSAQPVNSQSPTPMGPPTTPHSTHNTHSTHTMLTTTHPHTMLSGYIDSRHTDYALPSPTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963108;
- 90% Identity
- iTF_01424286;
- 80% Identity
- iTF_01419071;