Hros006027.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- lola
- Assembly
- GCA_963989215.1
- Location
- OZ022310.1:2323394-2330240[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-16 5.8e-13 48.4 0.0 2 42 375 416 374 419 0.94 2 2 6 4.5e+03 -2.5 0.0 30 42 419 432 418 433 0.80
Sequence Information
- Coding Sequence
- ATGTCCATGCAGCAGTTTTGTTTGAGATGGAACAATCATCAGCCAAACTTTATATCAGTGTTTTCAAGCTTGTTGAATAATGAAACCTTAGTAGATGTAACACTTGCCGCTGAAGGCAGGCATCTTCAAGCACATAAGGTTGTATTGTCTGCGTGCAGTACATACTTTCAGTCTCTCTTCACAGTAAATCCGTGTCAACATCCTATCGTGATATTAAAAGATGTGAAGTTTTCTGATCTCAAAATCATGGTAGACTTTATGTATTATGGAGAAGTTAACATATCACAGGATCAGTTACCTTCAATAATTAAGACAGCGGAGAGTCTGAAGATCAAAGGCTTAGCAGAAATGCATACAGCATCATTAACTAAATGGCCAAGTGGTAGCAGTGAGCCAGGAGGAGGAGATAGAGGAGAATCCTGTTCACCAAGTCCATCTCCTCTATCGCCATCTTTTCGTAGGAAAAGGTTGAGGAAAACATCAACAGGTTCTACATCAGGTTCTGGAGATAAATCagaagaaatcaatgaaataacTTTAGTAGCAACGAATATCGTAAAACCCGAACCACTAATTGTATCCCAGGATAGTGGGGAGAACTTAAGACGGCCACTAAACACCAGCACAGAATCTCAAGGCAGTATTGATGAAGATCAAATATCTATCATGAGCAACATGGAAAACAGTTCTGCTACAACACCAGCTCAAAGTGATGGTTCCATACAAGACGTAGGTCAGCAATCAGGTGGAAATGTAGGGCAAAGTTCTGTTTCTTCACAGCCACCGGCTCACCAAGGATTACAATGGACTATAATGGAGCACACGTATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCGTCATCGGCATTCACAACGCCCGAAATTACGGCGTCCTCAACGATCAGCGATCAGTATCCTGGCACCAGCACCACTGGTTCCAGTTGCGCCCTGACGAGCTATCCAAATTCCTCGCACGGGAGCTTGCAGCATGCGTCATCATCGAGCGCACCATCACCGTCGTCCCAGTGCCCGAGTAACTGTCAGAGCCCTTGCGCGAGTCCGCAAACGGCGATCAAGAGAAAGAGGTCGACGAATCCACAGGCCGATGAGAACTTTATTCGAGCCCTTGATGCCGTTCGATACGGTGGCATTGGTTTCTGTAAGGCTGCCAGAATGTTTGGTGTGAATAACCGAACACTCTGGCTCGAGTATAAGAAACGTGGTTATCCGAATAATCGGCCAAGTCTGAAATCGAGGGTGAAACAGGAAGCGAATTCTTCGCCACCGCCATCGTCGACTTCCGGTGGCTCAAGCGGAAATAGTAGTGGTACCGGTGCTGGATCCGCCCAACCGGTCAGCTCGCAAAGCCCCACACCGATGGGTCCACCTTCCACTCCACACAGTACACACAATACCCACAGTACGCACACTATGCTGACGGCTCACAGTCCTCACACTATGCTCAGCGGTTACATCGATAGCAGGCATACGGATTATGCACTTCCGAGCACAACAATGCCAATTAATCTTCACGGCGTTAATTACAACGCTATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNISQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGSSEPGGGDRGESCSPSPSPLSPSFRRKRLRKTSTGSTSGSGDKSEEINEITLVATNIVKPEPLIVSQDSGENLRRPLNTSTESQGSIDEDQISIMSNMENSSATTPAQSDGSIQDVGQQSGGNVGQSSVSSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEITASSTISDQYPGTSTTGSSCALTSYPNSSHGSLQHASSSSAPSPSSQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEANSSPPPSSTSGGSSGNSSGTGAGSAQPVSSQSPTPMGPPSTPHSTHNTHSTHTMLTAHSPHTMLSGYIDSRHTDYALPSTTMPINLHGVNYNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963108;
- 90% Identity
- iTF_01424286;
- 80% Identity
- iTF_00773905;