Basic Information

Insect: Lycaena phlaeas
Gene Symbol: -
Assembly: GCA_905333005.1
Location: HG995175.1:5018084-5038265[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8.1e-05 0.0067 17.3 1.5 1 23 430 452 430 452 0.96

2 20 0.0055 0.46 11.6 0.8 1 20 458 477 458 480 0.94

3 20 2e-05 0.0016 19.3 5.6 1 23 500 522 500 522 0.98

4 20 1.5e-05 0.0013 19.6 5.6 1 23 528 550 528 550 0.99

5 20 3.3e-05 0.0028 18.6 5.3 1 23 556 578 556 578 0.97

6 20 3e-05 0.0025 18.7 7.9 1 23 584 606 584 606 0.97

7 20 9.1e-07 7.5e-05 23.5 2.7 1 23 612 634 612 634 0.97

8 20 9.6e-05 0.0079 17.1 6.7 1 23 640 662 640 662 0.97

9 20 4.2e-05 0.0035 18.2 5.4 1 23 668 690 668 690 0.98

10 20 4.6e-07 3.8e-05 24.4 1.9 1 23 696 718 696 718 0.98

11 20 4.7e-05 0.0039 18.1 7.9 1 23 724 746 724 746 0.98

12 20 1.9e-06 0.00016 22.5 6.9 1 23 752 774 752 774 0.98

13 20 2e-05 0.0017 19.3 4.6 1 23 780 802 780 802 0.98

14 20 6.4e-05 0.0053 17.7 8.5 1 23 808 830 808 830 0.97

15 20 2e-06 0.00017 22.4 5.0 1 23 836 858 836 858 0.98

16 20 3.4e-07 2.8e-05 24.8 4.7 1 23 864 886 864 886 0.98

17 20 8.8e-06 0.00073 20.4 8.0 1 23 892 914 892 914 0.97

18 20 3.4e-06 0.00028 21.7 1.8 1 23 920 942 920 942 0.96

19 20 0.0004 0.033 15.2 0.5 1 23 949 971 949 971 0.96

20 20 0.00041 0.034 15.1 1.9 1 23 982 1004 982 1004 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8.1e-05	0.0067	17.3	1.5	1	23	430	452	430	452	0.96
2	20	0.0055	0.46	11.6	0.8	1	20	458	477	458	480	0.94
3	20	2e-05	0.0016	19.3	5.6	1	23	500	522	500	522	0.98
4	20	1.5e-05	0.0013	19.6	5.6	1	23	528	550	528	550	0.99
5	20	3.3e-05	0.0028	18.6	5.3	1	23	556	578	556	578	0.97
6	20	3e-05	0.0025	18.7	7.9	1	23	584	606	584	606	0.97
7	20	9.1e-07	7.5e-05	23.5	2.7	1	23	612	634	612	634	0.97
8	20	9.6e-05	0.0079	17.1	6.7	1	23	640	662	640	662	0.97
9	20	4.2e-05	0.0035	18.2	5.4	1	23	668	690	668	690	0.98
10	20	4.6e-07	3.8e-05	24.4	1.9	1	23	696	718	696	718	0.98
11	20	4.7e-05	0.0039	18.1	7.9	1	23	724	746	724	746	0.98
12	20	1.9e-06	0.00016	22.5	6.9	1	23	752	774	752	774	0.98
13	20	2e-05	0.0017	19.3	4.6	1	23	780	802	780	802	0.98
14	20	6.4e-05	0.0053	17.7	8.5	1	23	808	830	808	830	0.97
15	20	2e-06	0.00017	22.4	5.0	1	23	836	858	836	858	0.98
16	20	3.4e-07	2.8e-05	24.8	4.7	1	23	864	886	864	886	0.98
17	20	8.8e-06	0.00073	20.4	8.0	1	23	892	914	892	914	0.97
18	20	3.4e-06	0.00028	21.7	1.8	1	23	920	942	920	942	0.96
19	20	0.0004	0.033	15.2	0.5	1	23	949	971	949	971	0.96
20	20	0.00041	0.034	15.1	1.9	1	23	982	1004	982	1004	0.99

Sequence Information

Coding Sequence: ATGAATCCGGATCATCACAATATAAATACGGGTGGTGGCCAACCTCCTGGTAATTCTGAGGCTCAAAATCAAAGAGTTCCATCGTCGCAACAACAGCAAAGTAATAGCTTAACCCCCACGACATCTGCTACTGATTTGCGTGTAAATTCCGCGGCAGTTAACGTAGCATTGTCAAGCGTCGCCAAATACTGGGTGTTTACGAATTTATTTCCTGGACCCATTCCACAAGTATCGGTGTACGGTCTACCTACCAGCGCCAGACTTGAAAACGGAAAACCTGTGCAGGAGCTTGGTCAAGCACATCCGAGCATATTGAATGGAGACCCCAACATTATCTTGGGACACCATGGTGGTCAGCAACAAGTCGCTGTGTCTGCTTCTGGTCAACAAATTCCTGTGTCACAAATCATAGCCACCCAATCTGGTCAAGGGCACGGTAATTTAAAAAAACCACTGGTGCCACACGCACAGCAATCGGAAATCAGTTCACAGCAATCGTCTACTCCCGCCCAGGGCTCAGCCAGTAGTGGCCAGACCTCCCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGCAGGGACATCATTCCCAGCAACACAATATGATGCAACAGCAATTGATGGCGGCGTCTCGCCAAGAGCATTCTAATCAGCAGATCCAGTTGACCGTGAGCGAGGACGGTATCGTGACGGTGGTGGAGCCGGGCGGCAACAAGATGGTGGAGAAGGAGGAGCTGCACGAGACCATCAAGATGCCCGCCGACCACGCGCTCACCGTGCACCAGCTGCAGCAGATCGTTGGCCACCATCAGGTCATAGACAGCGTAGTGCGCATAGAACAAGCGACAGGGGAGCCTGCCAATATCCTTGTCACGCAAAACCCTGACGGCACCACGTCCATAGAGACCAGTGCCGCGGACCCTCTAGCTATATCCGTTAAGGACGAGAAGAATGTTCCCAAAATTGAGAATGCACAATTTGCTATACCCACCGACATAAAGGACATCAAGGGGTTGGATTTAAAGAACGTCGGGGCAATGGGTATGGAGGGCACGGTGGTGAAGATATCGACGGGCAACGACCAAGATCTCCACACCATGTATAAAGTAAACGTGGAGGACCTGTCGCAGCTGCTGGCATATCACGAGGTGTTCGGGAAACTCAATACTGAAACTCAACAGCAAGCTAAGCAGGTCATCACTGAAGTGGAGGTTGTGGCTGGGACAAGCGGATCCATATCTGAATCAGAGACCTCTCCAGGACATCATGCCTGTGACATATGTGGAAAGATATTTCAATTTCGCTACCAGCTGATTGTACATAGGCGATATCACGGCGAAACTAAACCCTTCACATGTCTCGTTTGTGGATCTTCCTTTGCTAATCCTGTTGAATTGTCAAGACATGGAAAGTGCCATCTAGCAGCTGGTGACCCTGCTGATAGGCAAGTAAAGAGGTTAGCACAAGACAAGCCCTACGCCTGCACCACTTGCCATAAGACATTCTCTCGGAAGGAACACCTCGACAACCACGTGAGAAGTCATACAGGAGAAACTCCATACCGGTGCCAGTACTGCTCCAAGACTTTCACCCGCAAGGAGCATATGGTGAACCATGTCCGCAAGCATACTGGCGAGACTCCGCATCGCTGTGAGATATGCAAGAAGAGCTTCACGAGGAAGGAACACTTTATGAATCATGTCATGTGGCACACCGGTGAAACGCCGCACCATTGTCAAATGTGCGGCAAGAAGTATACTAGAAAGGAGCACTTAGTGAATCATATGAGGTCGCACACTAACGATACGCCGTTCAGGTGTGAACTGTGCGGCAAGTCCTTCACCCGCAAGGAGCACTACACCAACCATATACTGTGGCACACCGGCGAAACACCGCACCGCTGCGACTTCTGCTCCAAGACGTTCACGCGCAAGGAGCACCTGTTGAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACCGCTGCAACTACTGCGCCAAGTCCTTCACGCGCCGCGAGCACCTCGTCAACCACGTGAGGCAGCACACCGGCGAGACGCCCTTCCAGTGTGGATACTGTCCCAAGGCGTTCACCAGGAAGGATCACCTCGTGAACCACGTCAGGCAGCACACGGGCGAGTCGCCGCACAAGTGTTCGTTCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGGCAGCACACCGGCGAGTCGCCGCACCGCTGCACCTACTGCGACAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCACGTCAGACAGCATACGGGGGAGACACCTCACAAGTGCACGTTTTGCCCGCGCGGCTTCGCGCGGAAGGAACACCTCACCAATCACATCAGACAACATACCGGCGACGTCCCCCACTCCTGCTCCTTCTGCCACAAGAGTTTCACCAGGAAAGAGCACCTCGTCAACCATATTCGACAACACACGGGCGAGACTCCGTTCAAGTGTACGTACTGCTCTAAGTCGTTTTCGCGTAAGGAGCATCTTACCAACCACGTGAACCTCCACACCGGCGAGACGCCGCACAAGTGTCCCATCTGTACCAAAACCTTCTCGAGGAAAGAACACCTCACCAACCATGTCAGGATACACACGGGCGAATCGCCACATCGCTGTGATTTCTGTAACAAAACGTTCACCAGGAAGGAGCACTTAACGAACCATATGAAACAGCACTCGGGCGACTCGCCCCACGCCTGCAAGGTCTGCTCCAAACCGTTCACGAGAAAGGAACTCCTGGTTACTCATATGAGATCGCATAGCTGCGGCGAGCGTCCTTTCAGTTGTTCAGAGTGCGGCAAATCGTTCCCACTAAAGGGCAACTTACTATTCCATGAACGATCTCACAATAAATCTGGAGCTGCTGGTTCCAAGCCCTTCCGGTGTGAAATATGTTCAAAGGACTTCATTTGCAAAGGTAACCTGGTCGCGCACCGGCGCACGCACACGGAGGTCGGAGCCGGCGACGCGCCCGTCGACGACGACTGCGGCGACTGCGACAAGGACGCCGAGCCCGTGGAACGCAAGCACACCGTCCGAGAGCCATCAGAAGGCAGATCTACAGAAAACACTGTGCCCCAAACACAACAGAACACACCTCCTGTAATGCAGATAACGAATCAGCCTCCGGTTCGTGCAACGACAAGTGCGGCCAATGTTGGCTCCGGAACATTCACCCACACTCCCAGCACCCAACACCACTCCGGAACATCCATAGCCCACCACACAGTCACTGTTAACTACTAA
Protein Sequence: MNPDHHNINTGGGQPPGNSEAQNQRVPSSQQQQSNSLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTSARLENGKPVQELGQAHPSILNGDPNIILGHHGGQQQVAVSASGQQIPVSQIIATQSGQGHGNLKKPLVPHAQQSEISSQQSSTPAQGSASSGQTSHQQVPNNRVEFVQHHNIDMQGHHSQQHNMMQQQLMAASRQEHSNQQIQLTVSEDGIVTVVEPGGNKMVEKEELHETIKMPADHALTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLAISVKDEKNVPKIENAQFAIPTDIKDIKGLDLKNVGAMGMEGTVVKISTGNDQDLHTMYKVNVEDLSQLLAYHEVFGKLNTETQQQAKQVITEVEVVAGTSGSISESETSPGHHACDICGKIFQFRYQLIVHRRYHGETKPFTCLVCGSSFANPVELSRHGKCHLAAGDPADRQVKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQMCGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCDKSFTRKEHLNNHVRQHTGETPHKCTFCPRGFARKEHLTNHIRQHTGDVPHSCSFCHKSFTRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVNLHTGETPHKCPICTKTFSRKEHLTNHVRIHTGESPHRCDFCNKTFTRKEHLTNHMKQHSGDSPHACKVCSKPFTRKELLVTHMRSHSCGERPFSCSECGKSFPLKGNLLFHERSHNKSGAAGSKPFRCEICSKDFICKGNLVAHRRTHTEVGAGDAPVDDDCGDCDKDAEPVERKHTVREPSEGRSTENTVPQTQQNTPPVMQITNQPPVRATTSAANVGSGTFTHTPSTQHHSGTSIAHHTVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289008; iTF_01178853; iTF_00008211; iTF_00262036; iTF_00744950; iTF_00787001; iTF_01248384; iTF_00404016; iTF_00934039; iTF_00935008; iTF_00406078;
90% Identity: iTF_00262036; iTF_00787001;
80% Identity: -