Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990054.1:7891162-7915416[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.3e-05 0.01 17.4 1.5 1 23 415 437 415 437 0.96

2 20 0.0019 0.21 13.3 2.1 1 20 443 462 443 465 0.94

3 20 2.3e-05 0.0025 19.3 5.6 1 23 484 506 484 506 0.98

4 20 0.0002 0.022 16.3 4.7 1 23 512 534 512 534 0.99

5 20 3.8e-05 0.0042 18.6 5.3 1 23 540 562 540 562 0.97

6 20 1.2e-05 0.0013 20.1 7.3 1 23 568 590 568 590 0.97

7 20 7.7e-07 8.4e-05 23.9 2.9 1 23 596 618 596 618 0.97

8 20 0.00011 0.012 17.2 6.7 1 23 624 646 624 646 0.97

9 20 4.8e-05 0.0053 18.3 5.4 1 23 652 674 652 674 0.98

10 20 5.2e-07 5.7e-05 24.4 1.9 1 23 680 702 680 702 0.98

11 20 5.3e-05 0.0059 18.1 7.9 1 23 708 730 708 730 0.98

12 20 2.8e-05 0.0031 19.0 6.3 1 23 736 758 736 758 0.98

13 20 4.4e-06 0.00048 21.5 4.5 1 23 764 786 764 786 0.98

14 20 1e-06 0.00011 23.6 4.2 1 23 792 814 792 814 0.98

15 20 2.5e-05 0.0027 19.2 7.3 1 23 820 842 820 842 0.97

16 20 3.9e-07 4.3e-05 24.9 4.7 1 23 848 870 848 870 0.98

17 20 4.8e-05 0.0053 18.3 7.3 1 23 876 898 876 898 0.97

18 20 1.5e-06 0.00016 23.0 1.4 1 23 904 926 904 926 0.97

19 20 0.00088 0.096 14.3 0.3 1 23 933 955 933 955 0.96

20 20 0.0066 0.72 11.5 3.3 1 23 963 985 963 985 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.3e-05	0.01	17.4	1.5	1	23	415	437	415	437	0.96
2	20	0.0019	0.21	13.3	2.1	1	20	443	462	443	465	0.94
3	20	2.3e-05	0.0025	19.3	5.6	1	23	484	506	484	506	0.98
4	20	0.0002	0.022	16.3	4.7	1	23	512	534	512	534	0.99
5	20	3.8e-05	0.0042	18.6	5.3	1	23	540	562	540	562	0.97
6	20	1.2e-05	0.0013	20.1	7.3	1	23	568	590	568	590	0.97
7	20	7.7e-07	8.4e-05	23.9	2.9	1	23	596	618	596	618	0.97
8	20	0.00011	0.012	17.2	6.7	1	23	624	646	624	646	0.97
9	20	4.8e-05	0.0053	18.3	5.4	1	23	652	674	652	674	0.98
10	20	5.2e-07	5.7e-05	24.4	1.9	1	23	680	702	680	702	0.98
11	20	5.3e-05	0.0059	18.1	7.9	1	23	708	730	708	730	0.98
12	20	2.8e-05	0.0031	19.0	6.3	1	23	736	758	736	758	0.98
13	20	4.4e-06	0.00048	21.5	4.5	1	23	764	786	764	786	0.98
14	20	1e-06	0.00011	23.6	4.2	1	23	792	814	792	814	0.98
15	20	2.5e-05	0.0027	19.2	7.3	1	23	820	842	820	842	0.97
16	20	3.9e-07	4.3e-05	24.9	4.7	1	23	848	870	848	870	0.98
17	20	4.8e-05	0.0053	18.3	7.3	1	23	876	898	876	898	0.97
18	20	1.5e-06	0.00016	23.0	1.4	1	23	904	926	904	926	0.97
19	20	0.00088	0.096	14.3	0.3	1	23	933	955	933	955	0.96
20	20	0.0066	0.72	11.5	3.3	1	23	963	985	963	985	0.99

Sequence Information

Coding Sequence: ATGAATCCggatcatcataatattaacaCGGGTGGTGGCCAACCTCCTGGCAATTCGGAgGCTCAGAGTCAAAGGGTTCCGTCGTCCCAGCAGCAGCAATCTAACAGCCTAACTCCCACGACGTCTGCTACTGATTTACGTGTAAATTCCGCGGCAGTCAATGTTGCTTTGTCGAGCGTCGCTAAATACTGGGTATTCACGAATTTATTTCCTGGACCCATACCACAAGTATCTGTATACGGTCTGCCGACGAGTGCTAGGCTTGAGAATGGAAAACCTGTGCAGGATCTTGGTCAAGCGCACCAAGGTATACTGAATGGAGACCCAAATATCATTCTGGGCCACCATGGTGGACAACAACCGGTAGCTGTCTCTGCATCTGGTCAACAAATACCCGTTTCTCAAATAATCGCCTCCCAGTCAGGACAAGatCCCCTGGCGCTCTCGCAGTCGGAACTCGGGTCTCAGTCATCCTCGTCCACAGCCCAGGTCACAGCCGGTGGCTCCCAAACCTCGCACCAGGTACCCAATAACCGGGTGGAGTTTGTACAACACCATAACATTGATATGGTAAATTATGTGGGCCATCATTCCCAGCAACTCTTACAGCAACAGCTGATGGCAGCTTCCCGGCAAGAGCATTCTAATCAGCAGATCCAACTCACAGTCAGCGAAGATGGAATAGTGACTGTTGTAGAGCCGGGCAGCACTAACAAGTTGGTGGATAAGGAGGACCTGCATGAGACCATCAAAATGCCAACAGACCACGCCCTTACTGTTCATCAACTGCAGCAAATTGTGGGACATCATCAgGTTATCGACAGTGTAGTACGTATAGAACAAGCCACTGGTGAACCAGCAAATATACTTGTGACACAGAATCCCGATGGCACCACCTCGATTGAGACGAGCTCCACGGACCTCAGCCTGGCCCAAGTAAAAGACGAGAAGACCACTATCGCGATACCAGCTGACATCAAGGATATCAAGGGAATAGACTTGAAGAATGTTGGTGCAATGGGTATGGAGGGTACAGTCCTCAAGATATCGACAGGCTCTGACCAAGATCTTCACACCATGTACAAAGTGAATGTCGAGGACCTATCGCAGCTGCTGGCTTACCATGAAGTGTTTGGGAAACTCAATACAGAAACCCAACAGCAGCCTAAGGTAATAGCCGAGGTGGAGGTTGTCCCAGGGACGAGTGGCACCATAGCGGACTCCGAGACGTCTCCTGGACACCATGCCTGTGATATTTGTGGGAAAATATTCCAATTCCGATACCAGCTCATTGTCCACAGGCGATATCACGGAGAAACCAAACCTTTTACATGTCATGTCTGCGGCTCAACATTCGCCAATCCTGTTGAACTCTCAAGACACGGAAAATGTCATCTAGCCGGTGATCCTGCCGAGCGTCAGGCCAAGAGGTTAGCACAAGACAAGCCCTACGCGTGCACCACTTGCCACAAGACATTCTCACGGAAGGAACATCTTGACAATCATGTTCGGAGTCATACAGGAGAAACTCCTTAcagGTGTCAGTTCTGCGCCAAGACGTTCACTCGTAAAGAGCACATGGTGAACCACGTCCGCAAACACACGGGCGAGACTCCGCACCGCTGCGAGATTTGCAAGAAGAGCTTCACGAGGAAAGAGCATTTCATGAACCACGTCATGTGGCATACAGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATCTAGTGAACCATATGAGGTCCCACACTAACGATACTCCGTTCCGATGTGAACTGTGCGGCAAGTCCTTCACCAGAAAGGAACATTTCACCAACCACATACTGTGGCACACCGGTGAGACACCTCACCGCTGCGACTTCTGTTCCAAGACATTCACACGCAAGGAACATCTACTGAACCACGTCAGACAGCATACGGGCGAATCTCCTCACCGTTGCAACTACTGCGCGAAGAGCTTCACTCGTCGAGAACACCTCGTCAACCATGTAAGACAACACACTGGAGAGACCCCATTCCAGTGTGGCTATTGTCCGAAGGCTTTTACCCGGAAAGACCATTTAGTGAACCACGTAAGACAGCACACCGGCGAATCTCCACACAAGTGTTCGTTCTGTACCAAGTCGTTCACCCGCAAGGAACATTTGACCAATCACGTGAGACAGCATACGGGGGAATCACCGCATCGATGTTCGTACTGCGCGAAGAGTTTCACTCGCAAGGAACATCTCAATAACCATGTTAGACAGCACACCGGCGAGACTCCTCACAAGTGCACGTACTGCCCGCGCGGGTTCGCGCGCAAGGAACACCTCACCAACCACATACGACAGCACACCGGCGACGTGCCCTACTCCTGCTCCTACTGCAGCAAGAGCTTCACGCGGAAAGAGCACCTGGTCAATCATATCCGACAACACACTGGCGAAACACCGTTCAAGTGCACGTACTGCACTAAGTCGTTCTCGCGTAAGGAGCACCTGACCAACCACGTCCACCTACATACCGGCGAGACGCCGCACAAGTGTCCGATCTGTACGAAAACATTCTCCAGGAAAGAGCACCTTACCAATCATGTCAGGATACACACGGGCGAGTCGCCGCATCGGTGTGAATTCTGCAACAAGACGTTCACGAGGAAAGAGCATCTAACGAACCATGTGAAACAGCATACTGGCGACACGGTGCACCCCTGCAAGGTCTGCTCCAAACCCTTCTCAAGAAAAGAACTACTGGCTACACATATGAGATCGCACAGCTGCGGCGAGCGGCCGTTCAGCTGCGGGGAGTGCGGCAAGACGTTCCCGCTTAAGGGAAACCTGCTGTTCCACGAGCGATCGCACAACAAGGGCGGCGCGGGGAAGTTCCGATGTGATATATGCTCCAAGGATTTCATGTGTAAAAGCAATATGGTGGCGCATCGGCGCACGCACGAGTCTGGCGAGGCGGCGGTCGAGGACTGCGGTGACTGCGAGAAGGAGGAACCAGTCGAGAGGAAACACAACATACGAGAACCATCTGAGGGTAGATCAACGGAGAGTGTTGTTCAAAACCAACAGAATGCGTCCACAGTCATGCAACAGATCACAAATCAGACACAAGTTCGAGCAGCAACTAGCGGGTCGAGCGTTGTCTCTGCTGGCAGCTTCACCCACACGACCGGCTCCCAGCACCACTCCGGTGCCGCTATAGCCCACCACACGGTCACAGTGAACTACTAG
Protein Sequence: MNPDHHNINTGGGQPPGNSEAQSQRVPSSQQQQSNSLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTSARLENGKPVQDLGQAHQGILNGDPNIILGHHGGQQPVAVSASGQQIPVSQIIASQSGQDPLALSQSELGSQSSSSTAQVTAGGSQTSHQVPNNRVEFVQHHNIDMVNYVGHHSQQLLQQQLMAASRQEHSNQQIQLTVSEDGIVTVVEPGSTNKLVDKEDLHETIKMPTDHALTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSSTDLSLAQVKDEKTTIAIPADIKDIKGIDLKNVGAMGMEGTVLKISTGSDQDLHTMYKVNVEDLSQLLAYHEVFGKLNTETQQQPKVIAEVEVVPGTSGTIADSETSPGHHACDICGKIFQFRYQLIVHRRYHGETKPFTCHVCGSTFANPVELSRHGKCHLAGDPAERQAKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLNNHVRQHTGETPHKCTYCPRGFARKEHLTNHIRQHTGDVPYSCSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCTKSFSRKEHLTNHVHLHTGETPHKCPICTKTFSRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHVKQHTGDTVHPCKVCSKPFSRKELLATHMRSHSCGERPFSCGECGKTFPLKGNLLFHERSHNKGGAGKFRCDICSKDFMCKSNMVAHRRTHESGEAAVEDCGDCEKEEPVERKHNIREPSEGRSTESVVQNQQNASTVMQQITNQTQVRAATSGSSVVSAGSFTHTTGSQHHSGAAIAHHTVTVNY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00925938;
90% Identity: iTF_01178853; iTF_01217674; iTF_00289008; iTF_00406078; iTF_00404016; iTF_00934039; iTF_01248384; iTF_00935008;
80% Identity: -