Ccec010225.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01020225.1:68083-88640[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.4e-05 0.0086 17.5 1.5 1 23 424 446 424 446 0.96 2 16 0.001 0.12 13.9 2.0 1 20 452 471 452 474 0.94 3 16 1.8e-05 0.0021 19.5 5.6 1 23 493 515 493 515 0.98 4 16 7.1e-05 0.0082 17.6 5.7 1 23 521 543 521 543 0.99 5 16 3e-05 0.0035 18.7 5.3 1 23 549 571 549 571 0.97 6 16 9.8e-06 0.0011 20.3 7.3 1 23 577 599 577 599 0.97 7 16 6.2e-07 7.2e-05 24.1 2.9 1 23 605 627 605 627 0.97 8 16 8.8e-05 0.01 17.3 6.7 1 23 633 655 633 655 0.97 9 16 3.9e-05 0.0045 18.4 5.4 1 23 661 683 661 683 0.98 10 16 4.2e-07 4.9e-05 24.6 1.9 1 23 689 711 689 711 0.98 11 16 4.3e-05 0.005 18.3 7.9 1 23 717 739 717 739 0.98 12 16 2.2e-05 0.0025 19.2 5.5 1 23 745 767 745 767 0.98 13 16 3.5e-06 0.00041 21.7 4.5 1 23 773 795 773 795 0.98 14 16 3.1e-07 3.6e-05 25.0 4.3 1 23 801 823 801 823 0.98 15 16 2e-05 0.0023 19.3 7.3 1 23 829 851 829 851 0.97 16 16 7.8e-07 9.1e-05 23.7 1.8 1 21 857 877 857 878 0.96
Sequence Information
- Coding Sequence
- ATGAATCcggatcatcataatattaacaCGGGTGGTGGCCAACCTCCTGGCAATTCAGAGCCTCAAAATCAAAGAGTCCAATCATCACAACAGCAGCAAACGAATAGCTTGACTCCTACAACATCTGCCACCGATTTACGTGTAAATTCCGCGGCAGTGAATGTAGCATTATCAAGCGTCGCTAAATATTGGGTATTTACGAATTTATTTCCTGGGCCCATACCACAAGTGTCTGTTTACGGTCTGCCAACAAGTGCAAGGATTGAGAACGGAAAACCTGTGCAGgATATTGGTCAAGCACATCCAAGTATATTAAATGGTGATCCTAATATTATCCTGGGGCATCATGGAGGTCAACAACAGGTTACCGTCTCCGCTGCTGGTCAACAGATTCCTGTCTCTCAAATCATTGCTACTCAATCTGGACAAGGACATGaaaCATTGGTGGCTCACACTCAGCAGGCAGAGCTTGGCACTCAACAGACGTCGGTCGCCGCTGCACAGGTCACAGTCAGTGGTGGCCAAACCTCCCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATTATGTGGGTCACCACTCTCAACAGCACATCATGCAACAGCAGCTGATGGCGGCAGCTCGACCGGAGCATTCCAATCAACAGATACAACTGACCGTCAGTGAAGATGGTATCGTGACTGTGGTGGAGCCCGGTGGAAGTAAATTAGTTGAGAAGGAGGATCTTCATGAAACAATCAAAATGCCCACAGACCACACACTCACTGTACATCAGCTGCAACAAATAGTCGGGCATCATCAGGTGATAGACAGCGTGGTCCGCATAGAGCAGGCGACGGGTGAGCCGGCGAACATTCTAGTGACTCAGAACCCCGACGGCACCACGTCAATAGAGACGAGCGCAGCTGACCCGCTTGTGAAAGATGAGAAGACGCCTAAAATAGAGGCAGCGCAGTTCGCGATACCCACTGATATCAAGGACATCAAGGGGCTGGATTTGAAGaaTGTCGGAACCATGGGAATGGAGGGCACAGTTGTAAAAATATCAACGGGGACAGATCAAGATCTACACACCATGTACAAAGTCAACGTAGAGGATCTGTCGCAGTTGTTAGCCTACCACGAAGTGTTCGGCAAACTCAACACCGAGAATCAACAGCAAGCTAAGGTTATAACAGAGGTAGAAGTAGTTGCCGGTACTAGCGGCTCAATATCAGAAGCCGAGACGTCGCCGGGGCATCACGCGTGCGACATCTGCGGCAAAATATTCCAGTTCCGATATCAGCTCATTGTCCACAGGCGGTATCACGGAGAAAGTAAACCTTACACATGTCATGTCTGTGGATCGACGTTTGCCAACCCTGTGGAATTGTCAAGGCATGGAAAATGTCACCTAGCCGGTGACCCCGCCGACCGTCAGGCGAAGAGACTCGCACAAGATAAACCATACGCCTGCACAACCTGCCACAAGACGTTCTCGCGGAAGGAGCACCTCGACAACCACGTGCGGAGTCACACCGGAGAGACGCCatacagATGTCAGTTCTGCTCCAAGACATTCACTCGCAAGGAGCACATGGTGAACCACGTGCGTAAACACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGAGGAAGGAGCACTTTATGAACCACGTCATGTGGCATACCGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCACTTAGTGAACCATATGAGGTCGCACACAAACGATACACCGTTCAGGTGCGAACTGTGCGGCAAGTCCTTCACGAGGAAAGAGCACTTCACCAACCACATACTGTGGCACACCGgtGAAACGCCTCATCGTTGCGATTTCTGCTCGAAAACATTCACTCGCAAGGAACACCTTCTAAACCACGTACGACAACACACGGGCGAGTCGCCGCACCGCTGCAACTACTGCGCCAAGAGCTTCACGCGGCGGGAGCACCTCGTCAACCACGTGCGCCAGCACACGGGCGAGACGCCTTTCCAGTGCGGCTACTGCCCCAAGGCCTTCACCAGGAAGGACCACCTCGTGAACCACGTGCGACAGCACACAGGCGAGTCGCCGCACAAGTGCTCGTTCTGCACCAAGTCGTTCACTCGTAAGGAACACCTCACCAACCACGTGCGACAACACACGGGCGAGTCGCCGCACCGCTGCTCCTACTGCGCGAAGAGCTTCACGCGCAAGGAGCATCTCATCAATCACGTCAGACAGCATACCGGGGAGACTCCTCACAAGTGCACGTATTGCCCCCGCGGCTTCGCGCGCAAGGAACACCTCACGAACCACATCAGACAACATACCGGCGACGTACCCTACTCCTGCTCCTACTGCAACAAGAGCTTCACCAGGAAAGAGCATCTCGTCAATCATATCCGACAACACACTGGCGAGACACCGTTCAAGTGCACGTACTGCACAAAGTCGTTCTCCCGTAAGGAGCATCTCACCAACCACGTGCATCTGCACACGGGAGAGACGCCGCACAAGTGTCCCATCTGTACGAAAACATTCTCGAGGAAAGAGCACCTTACCAACCACGTCAGGGCGCGCAATATTATTGGGCGTGGGTGGGCGCCCTGTTGTATCAACGTGTCCGGTCCAGATGATCTCGAACAAATGCTCAGTGAATATAATAGCCTCTCGGCGCTGCTTGACTACCGATACACAAAAGCACCGCACTTTAGGCAAGGCCTCTCCTGTTTGATAGTCAAAGTTACAACTGCCCCGTTACGGCCCAGCCACAACCACAGCGACGCGTCTTGTGACGCAACGAGCGACGCGGCGGGTGTCAAGGCCACAGCGACGcgtcttgcggcgcggcgagcggcgaggcaatactcgacgcgcgagtga
- Protein Sequence
- MNPDHHNINTGGGQPPGNSEPQNQRVQSSQQQQTNSLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTSARIENGKPVQDIGQAHPSILNGDPNIILGHHGGQQQVTVSAAGQQIPVSQIIATQSGQGHETLVAHTQQAELGTQQTSVAAAQVTVSGGQTSHQQVPNNRVEFVQHHNIDMVNYVGHHSQQHIMQQQLMAAARPEHSNQQIQLTVSEDGIVTVVEPGGSKLVEKEDLHETIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLVKDEKTPKIEAAQFAIPTDIKDIKGLDLKNVGTMGMEGTVVKISTGTDQDLHTMYKVNVEDLSQLLAYHEVFGKLNTENQQQAKVITEVEVVAGTSGSISEAETSPGHHACDICGKIFQFRYQLIVHRRYHGESKPYTCHVCGSTFANPVELSRHGKCHLAGDPADRQAKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCSKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLINHVRQHTGETPHKCTYCPRGFARKEHLTNHIRQHTGDVPYSCSYCNKSFTRKEHLVNHIRQHTGETPFKCTYCTKSFSRKEHLTNHVHLHTGETPHKCPICTKTFSRKEHLTNHVRARNIIGRGWAPCCINVSGPDDLEQMLSEYNSLSALLDYRYTKAPHFRQGLSCLIVKVTTAPLRPSHNHSDASCDATSDAAGVKATATRLAARRAARQYSTRE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00925938;
- 90% Identity
- iTF_00925938;
- 80% Identity
- -