Basic Information

Insect: Helleia helle
Gene Symbol: -
Assembly: GCA_963853865.1
Location: OY971426.1:6439065-6460403[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8e-05 0.0085 17.4 1.5 1 23 428 450 428 450 0.96

2 20 0.0016 0.17 13.2 2.1 1 20 456 475 456 478 0.94

3 20 2e-05 0.0021 19.3 5.6 1 23 497 519 497 519 0.98

4 20 1.5e-05 0.0016 19.6 5.6 1 23 525 547 525 547 0.99

5 20 3.3e-05 0.0035 18.6 5.3 1 23 553 575 553 575 0.97

6 20 3e-05 0.0032 18.7 7.9 1 23 581 603 581 603 0.97

7 20 9e-07 9.5e-05 23.5 2.7 1 23 609 631 609 631 0.97

8 20 9.5e-05 0.01 17.1 6.7 1 23 637 659 637 659 0.97

9 20 4.2e-05 0.0044 18.2 5.4 1 23 665 687 665 687 0.98

10 20 4.5e-07 4.8e-05 24.4 1.9 1 23 693 715 693 715 0.98

11 20 4.6e-05 0.0049 18.1 7.9 1 23 721 743 721 743 0.98

12 20 1.9e-06 0.0002 22.5 7.1 1 23 749 771 749 771 0.98

13 20 2e-05 0.0021 19.3 4.6 1 23 777 799 777 799 0.98

14 20 1.9e-06 0.0002 22.5 5.9 1 23 805 827 805 827 0.97

15 20 2.2e-05 0.0023 19.1 7.3 1 23 833 855 833 855 0.97

16 20 3.4e-07 3.6e-05 24.8 4.7 1 23 861 883 861 883 0.98

17 20 8.3e-06 0.00087 20.5 8.0 1 23 889 911 889 911 0.97

18 20 3.4e-06 0.00036 21.7 1.8 1 23 917 939 917 939 0.96

19 20 0.00068 0.072 14.4 0.3 1 23 946 968 946 968 0.96

20 20 0.00032 0.034 15.4 1.8 1 23 979 1001 979 1001 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8e-05	0.0085	17.4	1.5	1	23	428	450	428	450	0.96
2	20	0.0016	0.17	13.2	2.1	1	20	456	475	456	478	0.94
3	20	2e-05	0.0021	19.3	5.6	1	23	497	519	497	519	0.98
4	20	1.5e-05	0.0016	19.6	5.6	1	23	525	547	525	547	0.99
5	20	3.3e-05	0.0035	18.6	5.3	1	23	553	575	553	575	0.97
6	20	3e-05	0.0032	18.7	7.9	1	23	581	603	581	603	0.97
7	20	9e-07	9.5e-05	23.5	2.7	1	23	609	631	609	631	0.97
8	20	9.5e-05	0.01	17.1	6.7	1	23	637	659	637	659	0.97
9	20	4.2e-05	0.0044	18.2	5.4	1	23	665	687	665	687	0.98
10	20	4.5e-07	4.8e-05	24.4	1.9	1	23	693	715	693	715	0.98
11	20	4.6e-05	0.0049	18.1	7.9	1	23	721	743	721	743	0.98
12	20	1.9e-06	0.0002	22.5	7.1	1	23	749	771	749	771	0.98
13	20	2e-05	0.0021	19.3	4.6	1	23	777	799	777	799	0.98
14	20	1.9e-06	0.0002	22.5	5.9	1	23	805	827	805	827	0.97
15	20	2.2e-05	0.0023	19.1	7.3	1	23	833	855	833	855	0.97
16	20	3.4e-07	3.6e-05	24.8	4.7	1	23	861	883	861	883	0.98
17	20	8.3e-06	0.00087	20.5	8.0	1	23	889	911	889	911	0.97
18	20	3.4e-06	0.00036	21.7	1.8	1	23	917	939	917	939	0.96
19	20	0.00068	0.072	14.4	0.3	1	23	946	968	946	968	0.96
20	20	0.00032	0.034	15.4	1.8	1	23	979	1001	979	1001	0.99

Sequence Information

Coding Sequence: ATGAATCCGGATCATCACAATATAAATACGGGTGGTGGCCAACCTCCTGGGAATTCTGAGCCTCAAAATCAAAGAGTTCCATCGTCGCAACAACAGCAAAGTAATAGCTTAACCCCCACGACATCTGCCACTGATTTGCGTGTAAATTCCGCGGCAGTTAACGTAGCTTTGTCAAGCGTCGCCAAATATTGGGTGTTTACGAATTTATTTCCTGGACCCATACCACAAGTATCGGTGTATGGTCTACCTACCAGCGCCAGACTTGAAAACGGAAAACCTGTGCAGGATCTCGGTCAAGCACATCCAAGCATATTGAATGGAGACCCCAACATCATCTTGGGACACCATGCTGGTCAGCAACAAGTTGCCGTGTCTGCTGCCGGTCAACAAATTCCTGTCTCACAAATCATAGCCACTCAATCTGGTCAAGGACACgAACCATTGGTGCCACATGCACAGCAATCGGAAATCAGCTCGCAGCAACCATCTGCCCCCACGCAGGGCACAGCCAGTAGTGGCCAGTCGTCCCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATTATGTGGGACATCATTCCCAGCAACACAGTATGATGCAACAGCAGTTGATGGCGGCGTCCCGCCCGGAGCATTCCAATCAGCAGatCCAGTTGACTGTGAGCGAAGACGGTATAGTGACCGTGGTGGAGCCTggcggtaacaagatggtggagAAGGAGGAGCTACACGAGACTATCAAGATGCCAACCGACCACGCGCTCACGGTGCACCAGCTGCAGCAGATCGTTGGACACCATCAGGTCATAGACAGCGTAGTGCGCATAGAACAAGCGACAGGCGAGCCCGCCAATATCCTTGTCACACAAAACCCTGACGGAACCACGTCGATAGAGACCAGTGCTGCGGACCCTTTAGCTATATCTGTTAAGGACGAGAAGAATGTTCCCAAAATTGAGAATACTCAATTTGCTATACCTACTGATATAAAGGACATCAAAGGATTGGATTTAAAgAACGTTGGAGCAATGGGCATGGAGGGCACGGTGGTGAAGATATCGACGGGCAACGACCAAGATCTCCACACCATGTATAAAGTTAATGTGGAGGACCTGTCGCAGCTGCTGGCATATCATGAGGTGTTTGGGAAACTTAATACTGAAACTCAACAGCAAGCTAAGGTCATCACTGAAGTGGAGGTTGTAGCTGGGACTAGTGGGTCTATATCAGAATCGGAGACCTCTCCTGGACATCATGCCTGTGACATATGTGGGAAGATATTTCAATTTCGCTACCAGCTGATTGTACACAGGCGATATCACGGCGAAACTAAACCCTTCACATGTCACGTTTGTGGATCAACCTTCGCTAATCCAGTTGAATTGTCAAGACATGGAAAATGCCATCTAGCTGGTGACCCCGGTGATCGTCAAGGTAAAAGGTTAGCACAAGATAAGCCCTACGCCTGCACCACTTGCCATAAGACATTCTCTCGGAAGGAACACCTCGACAACCATGTGAGAAGTCATACAGGAGAAACTCCATACCGATGCCAGTACTGCTCCAAGACATTCACTCGCAAGGAGCATATGGTGAACCATGTCCGCAAACACACCGGTGAGACTCCACACCGCTGTGAGATATGCAAGAAGAGCTTCACGAGGAAGGAACACTTTATGAACCACGTTATGTGGCACACCGGTGAAACGCCGCACCATTGTCAAATGTGCGGCAAGAAGTATACTAGAAAGGAGCATTTAGTGAATCATATGAGGTCGCACACCAACGATACACCATTCAGGTGTGAACTGTGCGGCAAGTCCTTCACCCGCAAGGAGCACTACACCAACCATATACTGTGGCACACTGGCGAAACCCCGCACCGCTGCGACTTTTGCTCCAAGACGTTTACGCGCAAGGAGCACCTGTTGAATCACGTGCGACAGCACACGGGCGAATCTCCGCACCGCTGCAACTACTGCGCCAAGTCTTTCACGCGCCGCGAGCACCTCGTCAACCACGTGCGACAGCACACCGGCGAGACGCCCTTCCAGTGTGGATACTGTCCCAAGGCTTTCACCAGGAAGGACCACCTCGTGAACCACGTGAGGCAGCACACGGGCGAGTCGCCGCACAAGTGTTCGTTCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGACAACACACGGGCGAGTCGCCGCACCGCTGCACCTACTGCGACAAGTCCTTCACCAGGAAGGAGCACCTCACCAACCACGTCAGACAGCATACGGGGGAGACACCTCACAAGTGCACGTTTTGCCCGCGTGGCTTCGCGCGCAAGGAACATCTCACCAATCACATCAGACAACATACCGGCGACGTCCCCCACTCCTGCTCCTACTGCAACAAGAGTTTCACCAGGAAAGAGCACCTCGCCAACCATATTCGACAACACACGGGCGAGACTCCGTTCAAGTGTACGTACTGCACTAAGTCGTTTTCGCGTAAGGAGCATCTTACCAACCACGTGCATCTCCACACCGGCGAGACGCCGCACAAGTGTCCCATCTGTACCAAAACCTTCTCGAGGAAAGAACACCTCACCAACCATGTCAGAATACACACGGGCGAATCGCCGCATCGCTGTGAGTTCTGTAATAAAACGTTCACGAGGAAGGAGCACTTGACGAACCATATGAAACAGCACTCGGGCGACTCGCCCCACGCCTGCAAGGTCTGCTCGAAACCGTTCACGAGAAAGGAACTCCTGGTTACCCATATGAGATCGCATAGCTGCGGCGAGCGTCCTTTCAGTTGTGGAGAATGCGGCAAATCCTTCCCGCTGAAGGGCAACTTACTATTCCACGAACGATCTCACAATAAATCCGGAGCTGCTAGTAACAAGCTCTTCCGGTGTGAAATATGTTCAAAGGACTTTGTTTGTAAAGGTAACCTGGTGGCGCACCGGCGCACGCACGTGGAGGGCGGGGCCGGGGACGCGCCCGCCGAGGATGACTGTGAGAAGGACGCCGAGCCCGTGGAACGCAAGCACACCGTTCGAGAGCCTTCAGAAGGAAGATCTACAGAAAGTAGTGTGCCCCAAACTCCACAGAACACACCTGCAGTAATGCAAATAACAAATCAGCCTCCTGTCCGTGCATCAACGAGTGCGGCGAACGTCGGCTCCGGAACATTTACGCACACTCCCAGCACCCAGCACCACACCGGAACATCCATAGCTCACCACACAGTCACTGTTAACTACTAA
Protein Sequence: MNPDHHNINTGGGQPPGNSEPQNQRVPSSQQQQSNSLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTSARLENGKPVQDLGQAHPSILNGDPNIILGHHAGQQQVAVSAAGQQIPVSQIIATQSGQGHEPLVPHAQQSEISSQQPSAPTQGTASSGQSSHQQVPNNRVEFVQHHNIDMVNYVGHHSQQHSMMQQQLMAASRPEHSNQQIQLTVSEDGIVTVVEPGGNKMVEKEELHETIKMPTDHALTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLAISVKDEKNVPKIENTQFAIPTDIKDIKGLDLKNVGAMGMEGTVVKISTGNDQDLHTMYKVNVEDLSQLLAYHEVFGKLNTETQQQAKVITEVEVVAGTSGSISESETSPGHHACDICGKIFQFRYQLIVHRRYHGETKPFTCHVCGSTFANPVELSRHGKCHLAGDPGDRQGKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQMCGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCDKSFTRKEHLTNHVRQHTGETPHKCTFCPRGFARKEHLTNHIRQHTGDVPHSCSYCNKSFTRKEHLANHIRQHTGETPFKCTYCTKSFSRKEHLTNHVHLHTGETPHKCPICTKTFSRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHMKQHSGDSPHACKVCSKPFTRKELLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKSGAASNKLFRCEICSKDFVCKGNLVAHRRTHVEGGAGDAPAEDDCEKDAEPVERKHTVREPSEGRSTESSVPQTPQNTPAVMQITNQPPVRASTSAANVGSGTFTHTPSTQHHTGTSIAHHTVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00925938;
90% Identity: iTF_00925938;
80% Identity: -