Basic Information

Insect: Lysandra bellargus
Gene Symbol: -
Assembly: GCA_905333045.1
Location: HG995330.1:6147159-6187962[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8.6e-05 0.0071 17.4 1.5 1 23 396 418 396 418 0.96

2 20 0.0017 0.14 13.3 2.1 1 20 424 443 424 446 0.94

3 20 2.1e-05 0.0017 19.3 5.6 1 23 466 488 466 488 0.98

4 20 0.00019 0.015 16.3 4.7 1 23 494 516 494 516 0.99

5 20 3.5e-05 0.0029 18.6 5.3 1 23 522 544 522 544 0.97

6 20 1.1e-05 0.00093 20.2 7.3 1 23 550 572 550 572 0.97

7 20 7.2e-07 5.9e-05 24.0 2.9 1 23 578 600 578 600 0.97

8 20 0.0001 0.0083 17.2 6.7 1 23 606 628 606 628 0.97

9 20 4.5e-05 0.0037 18.3 5.4 1 23 634 656 634 656 0.98

10 20 4.9e-07 4e-05 24.5 1.9 1 23 662 684 662 684 0.98

11 20 5e-05 0.0041 18.2 7.9 1 23 690 712 690 712 0.98

12 20 1.2e-05 0.00095 20.2 7.3 1 23 718 740 718 740 0.98

13 20 4.1e-06 0.00034 21.6 4.5 1 23 746 768 746 768 0.98

14 20 9.4e-07 7.7e-05 23.6 4.2 1 23 774 796 774 796 0.98

15 20 2.3e-05 0.0019 19.2 7.3 1 23 802 824 802 824 0.97

16 20 3.6e-07 3e-05 24.9 4.7 1 23 830 852 830 852 0.98

17 20 8.9e-06 0.00073 20.5 8.0 1 23 858 880 858 880 0.97

18 20 7.8e-07 6.4e-05 23.8 1.5 1 23 886 908 886 908 0.97

19 20 0.00073 0.06 14.5 0.3 1 23 915 937 915 937 0.96

20 20 0.00061 0.05 14.7 2.3 1 23 945 967 945 967 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8.6e-05	0.0071	17.4	1.5	1	23	396	418	396	418	0.96
2	20	0.0017	0.14	13.3	2.1	1	20	424	443	424	446	0.94
3	20	2.1e-05	0.0017	19.3	5.6	1	23	466	488	466	488	0.98
4	20	0.00019	0.015	16.3	4.7	1	23	494	516	494	516	0.99
5	20	3.5e-05	0.0029	18.6	5.3	1	23	522	544	522	544	0.97
6	20	1.1e-05	0.00093	20.2	7.3	1	23	550	572	550	572	0.97
7	20	7.2e-07	5.9e-05	24.0	2.9	1	23	578	600	578	600	0.97
8	20	0.0001	0.0083	17.2	6.7	1	23	606	628	606	628	0.97
9	20	4.5e-05	0.0037	18.3	5.4	1	23	634	656	634	656	0.98
10	20	4.9e-07	4e-05	24.5	1.9	1	23	662	684	662	684	0.98
11	20	5e-05	0.0041	18.2	7.9	1	23	690	712	690	712	0.98
12	20	1.2e-05	0.00095	20.2	7.3	1	23	718	740	718	740	0.98
13	20	4.1e-06	0.00034	21.6	4.5	1	23	746	768	746	768	0.98
14	20	9.4e-07	7.7e-05	23.6	4.2	1	23	774	796	774	796	0.98
15	20	2.3e-05	0.0019	19.2	7.3	1	23	802	824	802	824	0.97
16	20	3.6e-07	3e-05	24.9	4.7	1	23	830	852	830	852	0.98
17	20	8.9e-06	0.00073	20.5	8.0	1	23	858	880	858	880	0.97
18	20	7.8e-07	6.4e-05	23.8	1.5	1	23	886	908	886	908	0.97
19	20	0.00073	0.06	14.5	0.3	1	23	915	937	915	937	0.96
20	20	0.00061	0.05	14.7	2.3	1	23	945	967	945	967	0.99

Sequence Information

Coding Sequence: ATGCCTGTTTTTAAGGCTCAGAGTCAGAGAGTCCCATCGTCCCAGCAGCAGCAGTCAAGTAGTCTCCCTCCCACCACATCTGCTACTGATTTACGAGTAAACTCCGCGGCAGTCAACGTTGCCTTGTCGAGCGTCGCTAAGTACTGGGTGTTCACGAATTTATTTCCTGGGCCCATACCACAAGTGTCTGTATACGGCCTGCCTACGAACGCCAGACTGGAGAATGGAAAACCTGTTCAGGATCTCGGTCAAGCCCATCAAAGTATACTGAATGGTGATCCGAATATAATTCTGGGTCACCATGGTGGGCAGCAGCCGGTAGCTGTCTCGGCGTCTGGACAACAAATACCTGTATCACAAATAATTGCATCACAGGCAGGACAAGATCCCCTGGCTCACTCGCAGTCGGAACTCGGGTCTCAGCAGTCGTCTTCGTCCAGCGCACAGGTTACAGCTGGGGGCTCCCAAACCTCGCACCAGGTACCCAATAACCGGGTGGAGTTTGTACAACACCATAACATTGATATGGGACATCATTCTCAGCTTCTTCAACAACAGTTGATGGCTGCTTCTCGGCAAGAGCACGCAAATCAGCAGATCCAACTCACGGTGAGTGAGGATGGTATAGTGACGGTCGTGGAGCCGGGCGGCGGTAACAAGTTGGTGGATAAGGATGAGCTACACGAGACCATCAAGATGCCGACAGACCACGCGCTCACCGTGCACCAGCTGCAGCAGATTGTGGGGCATCATCAGGTTATCGACAGTGTAGTACGTATAGACCAAGGTACTGGTGATCCAGCAAATGTAATTGTGACACAGAATCCCGACGGCACCACATCCATCGAGACGAGTTCCGGTGAACTCAGCCTAGCGCAGGTGAAAGATGAGAAGACCACCATCGCGATACCGGCTGAGATCAAGGATATCAAGGGAATTGACTTGAAGAATGTCGGCGCTATGGGTATGGAGGGTACAGTAGTGAAAATATCTACTGGCTCAGATCAAGATCTACACACCATGTACAAAGTGAATGTGGAGGATCTATCACAGCTGTTGGCCTACCACGAGGTGTTTGGTAAACTCAACACAGAGGCTGCACCGCAGGCTAAGGTCATAGCCGAAGTAGAAGTGATACCAGGTACCAGCGGCGCGTTGGCAGAATCGGAGACCTCGCCAGGGCATCACGCCTGTGATATATGCGGGAAAATATTCCAGTTCAGATACCAGCTTATAGTTCATAGGCGATATCACGGAGAAACCAAACCTTTTACATGTCATGTCTGCGGCTCGACCTTCGCGAATCCTGTTGAACTGTCAAGACACGGGAAATGTCATCTGGCCGCGGGAGATCCAGCCGAGCGTCAGGCGAAGAGGTTGGCGCAGGACAAGCCGTACGCGTGCACAACTTGCCACAAGACATTCTCGCGGAAGGAGCATCTAGACAACCATGTGCGGAGTCATACAGGGGAAACCCCTTACAGATGTCAGTTTTGCGCCAAGACGTTCACGCGTAAGGAGCACATGGTGAACCACGTCCGCAAACACACGGGCGAGACCCCGCACCGCTGTGAGATATGCAAGAAGAGCTTCACGAGAAAGGAGCACTTCATGAACCATGTTATGTGGCATACCGGTGAAACGCCGCACCATTGTCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCACTTAGTGAACCATATGAGGTCCCATACGAACGACACTCCGTTCAGGTGTGAACTGTGCGGCAAGTCCTTCACCCGGAAGGAACATTTCACCAACCACATACTGTGGCACACCGGTGAGACTCCGCACCGTTGCGACTTCTGTTCCAAGACGTTCACGCGTAAGGAGCACCTACTGAACCACGTCCGACAGCATACGGGCGAATCGCCTCATCGCTGCAACTACTGCGCCAAGAGCTTCACGCGACGGGAACACCTCGTCAACCACGTCAGACAGCATACGGGAGAAACACCGTTCCAATGCGGATACTGTCCGAAGGCTTTCACCCGGAAAGATCATTTAGTGAACCACGTCAGACAACATACGGGCGAATCTCCCCACAAGTGTTCCTTCTGCACCAAGTCGTTCACTCGCAAGGAGCACCTGACCAATCACGTGCGACAGCACACGGGGGAATCCCCGCACCGCTGCTCATACTGCAGCAAGAGCTTCACGCGCAAGGAACACCTCAATAACCACGTCAGACAGCACACCGGGGAGACTCCTCACAAGTGCACGTACTGCCCGCGCGGGTTCGCGCGCAAGGAGCACCTCACCAACCACATTCGCCAGCACACCGGCGACGTGCCCTACTCGTGCTCCTACTGCAGCAAGAGCTTCACGCGGAAAGAGCACCTGGTCAATCATATCCGACAACACACCGGCGAAACCCCGTTCAAGTGCACGTACTGCACAAAGTCGTTCTCGCGTAAGGAGCACCTGACGAACCACGTCCACCTTCACACCGGCGAGACGCCGCACAAGTGTCCGATCTGTACGAAAACATTCTCCAGGAAAGAGCACCTTACCAATCACGTCAGAATACATACGGGCGAGTCGCCGCATCGATGTGAGTTCTGCAACAAGACTTTCACGAGGAAGGAGCATCTGACAAACCATATGAAACAGCATTCGGGTGATTCAGTGCATCCCTGCAAGATATGTTCCAAACCATTCTCAAGAAAAGAATTGCTGGCTACGCATATGAGATCGCACAGCTGCGGCGAGCGGCCGTTCAGCTGCGGCGAGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTGCTCTTCCACGAGCGGTCGCACAACAAGGGCGGCGCCTCCAAGTTCCGCTGCGACGTGTGCTCCAAGGACTTCATTTGTAAAGCCAATCTTATGGCGCACCGGCGCACGCACGTGGAGTCCGGGGAGGCGGTGGCCGAGGATTGCAGCGACTGCGATAAGGAGGAACCAGTAGAGAGGAAACACAATATACGAGAACCGTCTGAGGGTAGATCAACAGAGAGTGTTGTTCAAAGCCAACAGAATACGTCCACAGTCATGCAACAGATCACAAATCAGCCACAAGTCCGAGCACCCACGACCGGTTCGACCGTCGGCGCGGGCAGCTTCGGCCACGCGACCGGCCATCACTCCGGCGCCACCATCGCCCATCACACAGTCACAGTCAACTACTAG
Protein Sequence: MPVFKAQSQRVPSSQQQQSSSLPPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTNARLENGKPVQDLGQAHQSILNGDPNIILGHHGGQQPVAVSASGQQIPVSQIIASQAGQDPLAHSQSELGSQQSSSSSAQVTAGGSQTSHQVPNNRVEFVQHHNIDMGHHSQLLQQQLMAASRQEHANQQIQLTVSEDGIVTVVEPGGGNKLVDKDELHETIKMPTDHALTVHQLQQIVGHHQVIDSVVRIDQGTGDPANVIVTQNPDGTTSIETSSGELSLAQVKDEKTTIAIPAEIKDIKGIDLKNVGAMGMEGTVVKISTGSDQDLHTMYKVNVEDLSQLLAYHEVFGKLNTEAAPQAKVIAEVEVIPGTSGALAESETSPGHHACDICGKIFQFRYQLIVHRRYHGETKPFTCHVCGSTFANPVELSRHGKCHLAAGDPAERQAKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCSKSFTRKEHLNNHVRQHTGETPHKCTYCPRGFARKEHLTNHIRQHTGDVPYSCSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCTKSFSRKEHLTNHVHLHTGETPHKCPICTKTFSRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHMKQHSGDSVHPCKICSKPFSRKELLATHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKGGASKFRCDVCSKDFICKANLMAHRRTHVESGEAVAEDCSDCDKEEPVERKHNIREPSEGRSTESVVQSQQNTSTVMQQITNQPQVRAPTTGSTVGAGSFGHATGHHSGATIAHHTVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00925938;
90% Identity: iTF_00744950;
80% Identity: -