Lmom011254.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- Paxbp1
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000157.1:512749-517747[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-30 2.5e-26 92.9 1.5 4 272 615 822 612 824 0.94
Sequence Information
- Coding Sequence
- ATGTCTCTATTTCGCAAACCAAAGAAAATACAGCGACGCGTGTTCTCCAGCAATGCCGACGAGGAGGACGATGAGGCCATGTTGGACATGGACACAGAAATGGAGCCGCCACCGCCGCCCATAATTTCCATATCCAGCAGCAGCAGACGTGATAAAGAAAAGGAAAAGAGCCGCAAGGGTGCAAAAACGCAGGAGGATGGCAGCAAGCCAAAGGCTTTGCTTAGTTTTGCCGATGATGAGGACGATGGTGAGGTGTTCCAAGTGCGAAAGTCATCGCATAGCAAAAAAGTCATGCGTATGCTGGACAAGGAGCGACGCAAGAAGAAACGCGAGGAACGTGGAGTTGGAGTGGGAGGCCAACAGGGTCAGCAGGAAAATGGTAGTACACAACAGCAGCATTTAGAGTCGTCCAGTGCCACAACTTCGGGTTCTGCTTCTTCTACGAATTCTAGTAGATATAATAAAAGTAAAAAAAGTGATAATGATATGATCCAAACCGAAATACGCACAGACGACTTTGTGTTGGTGGTCAAGAAATCGGAAACACCCGAAGCTATATTAAATGGTCGTGCTGCTTTGTGTGCTGGTCGAAATGATATGAGCGATGAAGAGGAAAATCAGTGCAAAGACGTTGATCGGGACAGGACACGACATCGTTTCTCTAAGCCGGAACATTTGAAGCAAATGCTAGAGAGTGGTTCCATACCCGATGCGGCTATGATACATGCTGCACGCAAACGCCGCCAGCGGGCCAGAGAGCAAGGTGCTGGTGACTATATACCCATTGAGGAGCCCAAAGAGCAGCCCAAGCTCAGTACACGTTTGCCCTGTGAAGATGTGGAAGGTGATCAGTCGGATGATGAGGAGCGCGTGGATATGAATGACATTACTGGTCGCAAGGAGCGCGAAGAGCGTCGCGAACAGTTCTATGCCGTTGAGAATGATTTGACCGAGGAGGATTCTGATCATGAGATGCATGAATGGGAGAATCAACAGATACGCAAAGGCGTAACCGGTGCCCAATTGGTACATGCCCAGCATGAGACAGTGCTCTCTCGGTTTATGATTAAGCCAGCCACTAACTTGGCCTTGGAGGATGCGGCGTCTCAACTACAGTCCACTTCCACTTTGCTGGAACAGGCCTATGCCAAGAATGCTTTGGAGCGTAGTATTCGCTCCTTGAACTCGGCCAAACCCAAAAAGGAGAAGGCCAAAGCCACTGCCCTACGTACCCCTCAAGAGATGCGTGCGGCCCTTCAGTCGCGGCTGCAGGAGCTCAAGGAACGCTCAGAGGATCACAGTGCTAGCATGGCCCGAATTAGTTTGGAGTTGAAATCTCTGAAACTACAGCAATTGGAATGCCAGCAAAATGCTCCCACTGCCGCAGCCAAATATAAATTCTATCAAGAGGTCAAATGCTATGTTAATGATCTGGTTGATTGTCTGGCCGAGAAGTCGCCGCCCATCCAAGAGCTGGAGAAGCGTGCACTGCAACAGTATGGCAAAAATCAACGTTATTTGGTCAATCGCCGGCGTCAGGATGTACGGGATCAGGCCAAAGAAATGGCCGAGGCGTCGAAACCAATTTCCGCCTGCAATCGCCGTTCCCCCGAATACGAGGAGCAAGTTCGTCGTGCAGCCGAACGCGAGGGTCGACGTACACGACGTCGCTGTGAGCGCGAACGCCAGGATCTTCTCTCCTCTCACCTAGATGGTATGTCCAGCGATGATGAGATTGCCGACCAGCAGCAGGAACAGTGTCTGGCTGCGTTGGCTCAAATAGAATTCCAAGCGACGGAGGCCTTTGACGATGTCAATGATGAATTTTGCAAAATTGACTTAATTCTGATCAAGTTCTATGCTTGGCGCAAGACAGATATGGCCTCGTACCAGGATGCTTTCGTAAGTCTGTGTTTGCCCAAGCTAATGGCTCCCCTGATGCGTCATGAGTTATTGCTCTGGTCACCACTGCTCGATGAATATGCGGATCTCGAGACAATGCATTGGTATCAGGCCTGCATGCTATATGCCTGCCAGCCGGACGAGACTTTGGAGCAGCTGAAAAATGATCCAGATGTGCAATTGGTACCCACGCTTATAGAGAGAATTGTGCTGCCCAAGGTGAACTCTCTGGTCACCGAATGCTGGGATCCCTTATCCACCACCCAAACACTGCGTCTGGTGGGCTTCATCAATCGTTTGGGTCGCGATTTTCCCTTGAGTCAAACCAACAAGCAGCTGAATAAGCTGTTCGAATCAATTATGGAGCGTATGCGTTTGGCCCTGGAAAATGATGTGTTTATACCCATCTTTCCCAAACAAGTCCAAGAGGCCAAGACATCATTCTTTCAGCGCCAATTCTGCAGTGGCCTGAAACTATTCCGTAATTTTCTCAGCTGGCAGGGTATACTGGCTGATAAGCCACTAAGAGAACTGGCCATTGGTGCATTACTTAATCGTTATCTTCTCATGGCCATGCGGGTCTGTACGCCCAATGATGCCATTAACAAGGCCTACATCATTGTAAATACCCTGCCCACAGTTTGGTTGCTGCCAAATAGTGAAACCCTCAAGAATTTGGAGTTATTTATCAGCTATATAAGACAGACGTTGGATAGCTGTGATGCCAGCAATCCTTTATTTATGCAATCCTGTGACAAGGCCAAGCAGATACTACAAAGACTACATAGTTTATAA
- Protein Sequence
- MSLFRKPKKIQRRVFSSNADEEDDEAMLDMDTEMEPPPPPIISISSSSRRDKEKEKSRKGAKTQEDGSKPKALLSFADDEDDGEVFQVRKSSHSKKVMRMLDKERRKKKREERGVGVGGQQGQQENGSTQQQHLESSSATTSGSASSTNSSRYNKSKKSDNDMIQTEIRTDDFVLVVKKSETPEAILNGRAALCAGRNDMSDEEENQCKDVDRDRTRHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQRAREQGAGDYIPIEEPKEQPKLSTRLPCEDVEGDQSDDEERVDMNDITGRKEREERREQFYAVENDLTEEDSDHEMHEWENQQIRKGVTGAQLVHAQHETVLSRFMIKPATNLALEDAASQLQSTSTLLEQAYAKNALERSIRSLNSAKPKKEKAKATALRTPQEMRAALQSRLQELKERSEDHSASMARISLELKSLKLQQLECQQNAPTAAAKYKFYQEVKCYVNDLVDCLAEKSPPIQELEKRALQQYGKNQRYLVNRRRQDVRDQAKEMAEASKPISACNRRSPEYEEQVRRAAEREGRRTRRRCERERQDLLSSHLDGMSSDDEIADQQQEQCLAALAQIEFQATEAFDDVNDEFCKIDLILIKFYAWRKTDMASYQDAFVSLCLPKLMAPLMRHELLLWSPLLDEYADLETMHWYQACMLYACQPDETLEQLKNDPDVQLVPTLIERIVLPKVNSLVTECWDPLSTTQTLRLVGFINRLGRDFPLSQTNKQLNKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKLFRNFLSWQGILADKPLRELAIGALLNRYLLMAMRVCTPNDAINKAYIIVNTLPTVWLLPNSETLKNLELFISYIRQTLDSCDASNPLFMQSCDKAKQILQRLHSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00515585; iTF_00604833; iTF_00539650; iTF_00578530; iTF_00619143; iTF_00504680; iTF_00588136; iTF_00494378; iTF_00596650; iTF_00581523; iTF_00529556; iTF_00565367; iTF_00548056; iTF_00605562; iTF_00511998; iTF_00592383; iTF_00527297; iTF_00593826; iTF_00594540; iTF_00491503; iTF_00561748; iTF_00612802; iTF_00533091; iTF_00617638; iTF_00541063; iTF_00569676; iTF_00525869; iTF_00590226; iTF_00489364; iTF_00480156; iTF_00531644; iTF_00488654; iTF_00571887; iTF_00505396; iTF_00524404; iTF_00536758; iTF_00478008; iTF_00490072; iTF_00482970; iTF_00609160; iTF_00613498; iTF_00485126; iTF_00606299; iTF_00492222; iTF_00916229; iTF_00914497; iTF_00917204; iTF_00919813; iTF_00915325; iTF_00918124; iTF_00614896; iTF_00566081; iTF_00550243; iTF_00545956; iTF_00579972; iTF_00488011; iTF_00503981; iTF_00477328; iTF_00475921; iTF_00481532; iTF_00538955; iTF_00615552; iTF_00604086; iTF_00555841; iTF_00483682; iTF_00555078; iTF_00577773; iTF_00501038; iTF_00590961; iTF_00612067; iTF_00618405; iTF_00523690; iTF_00571151; iTF_00600310; iTF_00503263;
- 90% Identity
- iTF_00914497; iTF_00917204; iTF_00916229; iTF_00919813; iTF_00918124; iTF_00915325;
- 80% Identity
- -