Dvar008903.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila varians
Gene Symbol
PAXBP1
Assembly
GCA_018150405.1
Location
JAECWK010000015.1:10741688-10745261[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.8e-31 4.4e-27 95.1 0.8 4 272 614 821 611 823 0.94

Sequence Information

Coding Sequence
ATGTCGCTTTTTCGTAAGCCAAAGAAAATCCAGAGGCGTGTGTTTTCCAGCAATGCAAACGAGGACGACGACGGGTCGTCGCTGGATCCAGACGCCGAAATGGAGGCGCCTCCGCCACCCGTAAAATCCGGCAAGCGGGACAAAGATAAGAGCCGGAAGACAATAAAATCGCAGGATGATGGCAAGCCCAAGGCTCTGCTCAGTTTTGCGGATGAAGAAGACGACGGTGAAGTGTTCCAAGTGCGAAAGTCGTCGCACAGCAAGAAAGTGATGCGCATGCTGGACAAGGAGCGCCGGAAAAAGAAACGCGAGGAACGGGCGGAGAACAGCGGACAACCGGGCAGCGAAAATGGTAGTACACATCATTTAGAGTCGTCTTCGGGTTACGCCAATACACATTCAGATGTTGGCACTGGCCGAGGCAAAGGTGCCAGCGATCAGAGTAAAAGTAAAAAAAGTGATAATCATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTAGTGGTAAAGAAATCGGAGACACCAGAGGCAATCTTAAACGGACGTGCAGCGCTTTGCGCCGGACGGGAAGACATGAGTGATGAGGATGAGCAATTGGAAGATGGTGGTCAAGACAAATCGCATCACCGGTTCTCCAAACCGGAGCATCTGAAACAAATGCTTGAAAGTGGGTCGATTCCAGATGCAGCTATGATCCACGCCGCCCGAAAGCGACGACAGCGGGCTAGGGAGCAGGGTGCCGGCGACTTTATACCTATCGAGGAGCCAAAAGAGCAGCCAAAGTTGAGCACACGCCTGCCTTGTGAGGATGTAGAGGGTGACCAGTCTGACGACGAGGAGCGGATGGACATGAATGACATAACTGGTCGCAAGGAGAGGGAAGAGCGGCGCGAGCAATTCTATGCTGTCGAAAATGATTCTACCGATGAGGACTCTGACCGCGAGATGAACGAATGGGAGAACCAGCAGATTCGCAAAGGCGTCACAGGCGCACAATTAGTTCATGCCCAGCACGAGACGGTGCTTTCCCGCTTCATGATAAAGCCATCGATAACAAGCGGCAGTGGTATGAATGATTCGGAACCTCCTGTAACACAGTCTACTTCCACGCTACTAGAAAAGGCCTATGCCAAAAACGCCCTGGAACGTAGCAATCTAGCCACAGCAGCTCGTGCAGCTTCCAAGTCTAAGAAAGATAAAGCAAAGGCCGCGTCTTTACGGACGCCTCAGGAGATATTTGAGGCCATCAAGTCGCGACTGGCTGAACTCAAAGAGCGATCAGCGGATCACAGTGCCAGCATAGCTAGAATCAGTACCGAATTAAAATCCTTGAAGCTCCAGCAGTTGGAGTGCCAACAGAATGCTCCCACAGCAGCGGCCAAATACAAGTTCTATCAGGAGGTCAAATGCTACGTAAACGACTTGGTCGACTGCCTTGCCGAGAAGACGCCACTGATTAACGATTTAGAAAAGAGGTCACTGCAGCAATATGGAAAGAATCTGCGATATTTAGTAAACAGAAGGCGGCAAGATGTTCGGGATCAAGCAAAGGAAATAGCTGAAGCGTCAAAGCCCATCTCAGCATCTGCCCGTCGAACCCCCGAACACGAAGAGCAAGTCCGCCGGGCCGCCGAAAGAGAAGGGCGAAGGACGCGTAGGAGATGCGAACGCGAACGGAACGACCTCCTGGCCTCTCATTTGGACGGCATGTCCAGTGACGATGAGATTCCGGACCAGCAGCAGGAACAAAGTGTGGCTGCCTCGGCACAAATCGAATCTCAATCTGTAGAGGCTTTCGAGGACGTCACAGATGATTTCTGCAAAGTTGAACTTATTTTAATGAAGTTTTATGCTTGGCGGAAGACAGACATGGCCTCGTATCAGGACGCATTCGTAAGTTTGTGCCTTCCCAAGGTCTTGGCTCCCCTGGTGCGACACGAAATGCTGTTATGGTCACCAATGCTGGATGAATATGCTGACATAGAGACCATGCGGTGGTATCAAGCCTGTATGTTATATGCCTGCCAACCTGATGAAACAGTAGAGCAACTAAAGAGCGACCCGGATGTTAATTTGGTGCCAGCGCTAATCGAGAAAATTGTGTTGCCCAAACTAACAGTCCTAGTTACAGAGTGCTGGGATCCATTGTCTACAACCCAAACGCTGCGCCTGGTGGGCTTCATAAATCGGCTGGGGAGAGAGTTTCCTCTCAGTGGAACAAACAAGCAGCTTAACAAACTCTTTGAATCAATAATGGAGCGCATGAGATTAGCTCTAGAGAATGATGTGTTTATACCCATCTTTCCCAAACAAGTACAAGAAGCGAAGACATCGTTCTTTCAGCGTCAGTTTTGTAGCGGGCTCAAATTGTTTCGAAACTTTCTTAGTTGGCAGGGCATTCTGGCTGATAAGCAGCTCCGTGAATTGGCCATTGGTGCGCTTCTGAACCGCTACTTGCTTCTGGCCATGCGCGTCTGTACGCCAAACGATGCCATCAACAAAGCATATATAATTGTAAATACGCTGCCCACGGTTTGGCTATTACCCAACAGTGATACTCTGAAAAACCTGGAGCTTTTCATTAGCTACATTAAGCAAACATTAGAGAGCTGTGATGCAATCAATCCCGTTTTTGTACAATCCAGCGATAAGGCCAAGCAAATTCTTCAAAGACTACATAGTTTATAA
Protein Sequence
MSLFRKPKKIQRRVFSSNANEDDDGSSLDPDAEMEAPPPPVKSGKRDKDKSRKTIKSQDDGKPKALLSFADEEDDGEVFQVRKSSHSKKVMRMLDKERRKKKREERAENSGQPGSENGSTHHLESSSGYANTHSDVGTGRGKGASDQSKSKKSDNHMIQTEIRTDDFVLVVKKSETPEAILNGRAALCAGREDMSDEDEQLEDGGQDKSHHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQRAREQGAGDFIPIEEPKEQPKLSTRLPCEDVEGDQSDDEERMDMNDITGRKEREERREQFYAVENDSTDEDSDREMNEWENQQIRKGVTGAQLVHAQHETVLSRFMIKPSITSGSGMNDSEPPVTQSTSTLLEKAYAKNALERSNLATAARAASKSKKDKAKAASLRTPQEIFEAIKSRLAELKERSADHSASIARISTELKSLKLQQLECQQNAPTAAAKYKFYQEVKCYVNDLVDCLAEKTPLINDLEKRSLQQYGKNLRYLVNRRRQDVRDQAKEIAEASKPISASARRTPEHEEQVRRAAEREGRRTRRRCERERNDLLASHLDGMSSDDEIPDQQQEQSVAASAQIESQSVEAFEDVTDDFCKVELILMKFYAWRKTDMASYQDAFVSLCLPKVLAPLVRHEMLLWSPMLDEYADIETMRWYQACMLYACQPDETVEQLKSDPDVNLVPALIEKIVLPKLTVLVTECWDPLSTTQTLRLVGFINRLGREFPLSGTNKQLNKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKLFRNFLSWQGILADKQLRELAIGALLNRYLLLAMRVCTPNDAINKAYIIVNTLPTVWLLPNSDTLKNLELFISYIKQTLESCDAINPVFVQSSDKAKQILQRLHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00919050;
90% Identity
iTF_00566081; iTF_00550243; iTF_00579972; iTF_00488011; iTF_00477328; iTF_00475921; iTF_00481532; iTF_00538955; iTF_00614896; iTF_00545956; iTF_00503981;
80% Identity
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