Basic Information

Insect: Drosophila parabipectinata
Gene Symbol: PAXBP1
Assembly: GCA_018153455.1
Location: JAECYA010000178.1:12124651-12128195[+]

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 8.2e-30 6.7e-26 91.4 1.2 10 272 621 822 618 824 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	8.2e-30	6.7e-26	91.4	1.2	10	272	621	822	618	824	0.94

Sequence Information

Coding Sequence: ATGTCGCTTTTTCGTAAGCCAAAGAAAATCCAGCGTCGTGTATTTTCCAGCAATGCCGACGAGGAAGAAGGCGGAGCGTCGCTGGATCCGGACGCCGAAATGGAGGCGCCTCCGCCACCCATAATCACTGGAAAGCGGGACAAAGAGAAGAGCCGGAAGCCAATAAAATCACTGGATGATACCAAACCCAAGGCTTTGCTTAGCTTTGCGGATGACGAGGACGATGGTGAAGTGTTCCAAGTGCGAAAGTCGTCGCACAGCAAGAAAGTGATGCGTATGATGGACAAGGAGCGGCGAAAGAAAAAACGCGAGGAACGGGCGGAGAACAGCGGACAGGCAGGCGGCGAAAATGGTAGTACACAGCATTTAGAGTCGTCTTCGGGTTACGGCAATCCACATTCAGATGGTGGCGTTGGCCGATGCAAAGGTGCCAGCGATCAGAGTAAAAGTAAAAAAAGTGATAATCATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTAGTGGTAAAGAAATCAGAGACACCAGAGGCAATCTTAAATGGACGTGCCGCCCTTTGCGCCGGACGGGATGACTTGAGCGACGAGGATGACCAATCCGAAGATGGTGGCCGAGACAAATCGCATCACCGCTTCTCCAAACCGGAACATCTGAAGCAGATGTTGGAAAGCGGTTCTATCCCTGATGCAGCTATGATTCACGCCGCCCGGAAACGACGTCAACGTGCTAGAGAACAGGGGGCTGGCGACTTCATACCCATCGAGGAGCCAAAGGAGCAACCCAAGCTAAGCACACGCCTGCCTTGTGAGGATGTAGAGGGAGACCAGTCCGATGACGAGGAGCGCATGGACATGAACGACATAACTGGACGCAAGGAACGAGAAGAGCGACGCGAGCAATTCTATGCAGTCGAAAATGATTCCACTGATGAGGACACTGACCGCGAGATGAACGAATGGGAGAATCAACAGATTCGCAAAGGCGTCACAGGGGCACAGTTAGTCCATTCCCAACACGAGTCGGTGCTTTCCCGCTTTATAATAAAGCCATCCATGACGAGTGGAGGAGGTGCCTCAGATGATTCTGAGCCTCCACCCCCACAGTCTACGTCCACGCTGCTGGAAAAGGCCTACGCCAAAAACGCCTTGGAACGCAGCAATTTAGCCACGGCAGTTCGATCAGCTTCCAAGTCGAAAAAAGAAAAGGGAAAACCCGCCACATTACGGACGCCTCAGGAGATCTTCGAGGCCATCAAATCACGACTCACTGAACTAAAAGAAAGATCGGCGGATCACAGTGCCAGCATAGACAGAATCAGTACCGAACTAAAGACCCTGAAGCTCCAGCAATTAGAATGCCAACAGAATGCTCCCACAGCAGCGGCCAAGTACAAATTTTATCAGGAGGTCAAGTGCTACGTTAAGGACTTGGTCGACTGCCTCGCCGAGAAAACGCCACTGATTAACGATCTGGAAAAGCGGGCTCTGCAGCAATACGGAAAGAACCAGCGATATTTGGTAAACCGAAGGCGCCAAGATGTTCGAGATCAAGCAAAGGAAATAGCCGAGGCATCAAAACCCACCTCAGCAGCTGCCCGTCGAACTCCCGAATACGAAGAGCAAGTCCGCCGTGCCGCGGAAAGGGAGGGACGACGGACGCGTCGGAGATGTGAACGCGAACGTAAGGACCTCCTTTCCTCCCATTTGGACGGCATGTCCAGCGACGACGAGATCCCCGACCAGCAACAGGAACAAAGTGTGGCTGCCTCGGCACAAATTGAATCTCAATCGATAGAGGCCTTCGAGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGCGTGGCGAAAAACAGACATGTCCTCGTATCAGGACGCATTTGTTAGCCTGTGCCTCCCTAAGGTTTTGGCTCCCCTTGTGCGACACGAAATGCTTTTATGGTCACCAATGCTGGACGAGTATGCCGATATCGAGAATATGCGGTGGTATCAAGCCTGTATGTTATATGCCTGCCAACCTGATGAAACTGTGGAACAATTAAAAAGTGATCCGGATGTTAATTTGGTGCCAGCATTAGTTGAGAAAATTGTGTTGCCCAAACTTACAGTCCTAGTTACGGAGAGTTGGGACCCGTTGTCTACTACGCAAACCCTGCGCCTGGTGGGCTTTATAAATAGACTGGGGCGAGAGTTTCCTCTGAGTGGAACCAACAAGCAGCTCAACAAACTTTTTGAATCCATTATGGAGCGCATGAGATTGGCCCTTGAAAATGATGTATTTATACCCATCTTCCCCAAGCAAGTACAAGAAGCAAAGACATCGTTCTTCCAGCGCCAATTCTGCAGCGGGCTCAAGCTGTTCCGCAACTTTCTTAGCTGGCAGGGCATTCTAGCTGATAAGCACCTGCGAGAACTGGCCATTGCATCGTTATTGAATCGCTACCTGCTTTTGGCCATGCGCGTTTGTACTCCAAACGATGCCATCAACAAGGCATATATAATTGTGAATACCCTTCCGACGGTTTGGTTATTACCCAACAGCGATACCCTCAAGAACTTGGAGCTTTTTATTAATTACATTAAGCAAACTTTAGAGAGCTGTGATGCAACCAATCCAGTTTTTATACAATCCAGCGATAAGGCCAAGCAAATTCTTCAAAGACTTCATAGTTTATAA
Protein Sequence: MSLFRKPKKIQRRVFSSNADEEEGGASLDPDAEMEAPPPPIITGKRDKEKSRKPIKSLDDTKPKALLSFADDEDDGEVFQVRKSSHSKKVMRMMDKERRKKKREERAENSGQAGGENGSTQHLESSSGYGNPHSDGGVGRCKGASDQSKSKKSDNHMIQTEIRTDDFVLVVKKSETPEAILNGRAALCAGRDDLSDEDDQSEDGGRDKSHHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQRAREQGAGDFIPIEEPKEQPKLSTRLPCEDVEGDQSDDEERMDMNDITGRKEREERREQFYAVENDSTDEDTDREMNEWENQQIRKGVTGAQLVHSQHESVLSRFIIKPSMTSGGGASDDSEPPPPQSTSTLLEKAYAKNALERSNLATAVRSASKSKKEKGKPATLRTPQEIFEAIKSRLTELKERSADHSASIDRISTELKTLKLQQLECQQNAPTAAAKYKFYQEVKCYVKDLVDCLAEKTPLINDLEKRALQQYGKNQRYLVNRRRQDVRDQAKEIAEASKPTSAAARRTPEYEEQVRRAAEREGRRTRRRCERERKDLLSSHLDGMSSDDEIPDQQQEQSVAASAQIESQSIEAFEDXXXXXXXXXXXXXXXYAWRKTDMSSYQDAFVSLCLPKVLAPLVRHEMLLWSPMLDEYADIENMRWYQACMLYACQPDETVEQLKSDPDVNLVPALVEKIVLPKLTVLVTESWDPLSTTQTLRLVGFINRLGREFPLSGTNKQLNKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKLFRNFLSWQGILADKHLRELAIASLLNRYLLLAMRVCTPNDAINKAYIIVNTLPTVWLLPNSDTLKNLELFINYIKQTLESCDATNPVFIQSSDKAKQILQRLHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00919050;
90% Identity: iTF_00615552;
80% Identity: -