Djam005926.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila jambulina
Gene Symbol
PAXBP1
Assembly
GCA_018152175.1
Location
JAECXH010000012.1:16833898-16837778[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.7e-32 7.2e-28 97.8 0.7 4 272 627 834 624 836 0.94

Sequence Information

Coding Sequence
ATGTCGCTTTTCCGCAAACCAAAGAAAATCCAGCGTCGTGTGTTCTCCAGCAATGTGGACGAGGACGAGGGGCCACCGCTGGATCCTGACGCCGAAATGGAGGCGCCTCCGCCGCCCGTAATATCCGGCAAGCGGGACAACAAAGAGAAGAGCCGAAAGCCCGCAAAGCCGCAGGATGACAACAGCAAGCCCAAGGCTCTGCTCAGTTTTGCGGACGATGAGGACGACGGAGAGGTCTTCCAGGTGCGGAAATCGTCGCACAGCAAGAAAGTGATGCGCATGCTGGACAAGGAGCGGCGCAAAAAGAAGCGCGAGGAACGGGCGGAGAACAGCCTCGGACAACTGCTCGGTGGCGAAAATGGTAGTACACAGCATTTAGAGTCGTCCGGTGGCGCGTCTTCGGGGTCAGCTCAAACTCCCAACTCTAGTGCAGCTGGCAGATGTAGGAATACTGCCAGCGATCAGAGTAAAAGTAAAAAAAGTGATAATCATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTAGTGGTAAAGAAATCAGAGACACCTGAGGGAGTACTGAACGGTCGAGCTGCCCTTTGTGCTGGCCGAGATGATATGAGCGACGAAGATGATCAGCAATCCGAGGATGGTGGTCATGACAAGTCGCGCCATCGCTTCTCAAAGCCAGAGCACCTGAAGCAGATGTTGGAAAGCGGTTCAATTCCGGATGCAGCGATGATACACGCTGCCCGAAAGCGTCGTCAGCGGGCCAGGGAACAAGGCGCCGGAGACTACATTCCCGTTGAAGAACCCAAGGAACCGCCTAAGCTTAGCACCCGACTTCCCTGCGAGGATGTGGAGGGTGATCAATCTGATGACGAGGAGCGTATGGATATGAACGACATAACCGGGCGCAAGGAGCGCGAGGAGCGTCGCGAGCAGTTCTATGCGGTCGAGAATGATTCCACCGATGAAGACTCCGACCGCGAAATGAACGAGTGGGAGAATCAACAGATACGCAAGGGTGTCACGGGTGCCCAGTTGGTCCATGCACAGCACGAAACCGTCCTGTCACGCTTTATGATCAAGCCTGCTACTTCGGCAGGAGGGTCCGTTGTAAACGATGACGCGGGTGGTATGGCGCCGCCTCCACAGTCAACGTCCACGCTGCTGGAACAGGCCTACGCCAAGAGCTCGCTAGATCGCATCAATCTGGCGGCAGCTGTGCGATCATCTTCAAAGGCCAAGAAAGAGAAGGCTAAGGCCACGGCGTTGCGAACACCTCAGGAGATCTTTTCTGCCATTCAGTCGCGTCTGGGCGAGCTTAGAGAACGCTCGACCGATCACAGCGCCAGCATGGCCAGGATTAGTCTCGAGCTGAAGTCATTGAAGCTGCAGCAGTTGGAGTGCCAGCAAAATGCACCAACTGCGGCGGCCAAGTACAAATTCTATCAGGAGGTCAAGTGCTATGTTAACGACCTGGTCGACTGCCTGGCCGAGAAGACACCGATGATTAATGAACTGGAAAAGCGAGCCCTTCAGCAATATGGAAAGAATCAACGGTATCTGGTTAACCGTCGCCGCCAAGATGTCCGGGACCAGGCCAAGGAAATTGCCGAGGCAGCAAAGCCCATGTCTGCTGCTGCCCGTCGGGCACCGGAATACGAGGAGCAAGTTCGTCGAGCGGCGGAGCGCGAGGGTCGTAGGACACGCCGTCGTTGTGACCGTGAACGAAACGATCTGCTCTCCTCGCACCTAGATGGCATGTCCAGCGACGATGAGATCGCCGACCAGCAGCAGGAACAGAGCGTGGCTTCCACCGCTCAAATGGAGGCACAGGCTTTGGAGACCTTCGAGGACGTCACCGACGAATTCTCAAAGGTCGAGCTGATTCTGATGAAGTTCTATGCCTGGCGTAAGACGGACATGTCCTCCTACCAAGATGCTTTCGTTAGTTTGTGCCTGCCCAAGGTATTGGCGCCGCTTGTGCGCCACGAACTGCTCCTGTGGTCGCCACTGCTGGACGAGTACGCGGATATCGAGAATATGCGTTGGTATCAGGCCTGCATGCTCTATGCCTGTCAGCCAAATGAGACCGTGGACCAGCTGAAGAACGATCCGGACGTCAATTTGGTCCCGTCGCTCATTGAAAAGATAGTTCTGCCCAAGGTGACCGCTTTGGTCACCGAATGCTGGGATCCGCTGTCCACCACACAGACGCTGAGACTGGTGGGTTTCATCAATCGTTTGGGCCGAGAGTTCCCACTGAGCGGCACCAACAAACAGTTGAACAAGCTGTTTGAGTCCATAATGGAACGCATGCGATTGGCCCTGGAGAACGATGTCTTTATACCCATATTTCCCAAGCAAGTGCAAGAGGCCAAGACATCCTTTTTCCAGCGTCAGTTTTGCAGCGGCCTGAAGCTTTTCCGAAACTTTCTTAGCTGGCAGGGAATTTTGGCAGATAAACTGCTTCGAGAGCTTGCTATTGGGGCGCTATTAAATCGCTACCTTCTGCTGGCTATGCGCGTCTGCACACCAAACGATGCCATTAACAAGGCCTACATCATTGTGAATACTTTGCCCACGGTCTGGCTGCTGCCCAACAGCGAAACCCTGAAGAATCTTGAGCTCTTCATAGGATACATCAAGCAAACTCTAGAGAGCTGTGATGCCAGCAATCCGCCAGTCTTTATGCAATCCAGCGATAAGGCCAAGCAGATACTTCAAAGACTTCATAGTATATAG
Protein Sequence
MSLFRKPKKIQRRVFSSNVDEDEGPPLDPDAEMEAPPPPVISGKRDNKEKSRKPAKPQDDNSKPKALLSFADDEDDGEVFQVRKSSHSKKVMRMLDKERRKKKREERAENSLGQLLGGENGSTQHLESSGGASSGSAQTPNSSAAGRCRNTASDQSKSKKSDNHMIQTEIRTDDFVLVVKKSETPEGVLNGRAALCAGRDDMSDEDDQQSEDGGHDKSRHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQRAREQGAGDYIPVEEPKEPPKLSTRLPCEDVEGDQSDDEERMDMNDITGRKEREERREQFYAVENDSTDEDSDREMNEWENQQIRKGVTGAQLVHAQHETVLSRFMIKPATSAGGSVVNDDAGGMAPPPQSTSTLLEQAYAKSSLDRINLAAAVRSSSKAKKEKAKATALRTPQEIFSAIQSRLGELRERSTDHSASMARISLELKSLKLQQLECQQNAPTAAAKYKFYQEVKCYVNDLVDCLAEKTPMINELEKRALQQYGKNQRYLVNRRRQDVRDQAKEIAEAAKPMSAAARRAPEYEEQVRRAAEREGRRTRRRCDRERNDLLSSHLDGMSSDDEIADQQQEQSVASTAQMEAQALETFEDVTDEFSKVELILMKFYAWRKTDMSSYQDAFVSLCLPKVLAPLVRHELLLWSPLLDEYADIENMRWYQACMLYACQPNETVDQLKNDPDVNLVPSLIEKIVLPKVTALVTECWDPLSTTQTLRLVGFINRLGREFPLSGTNKQLNKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKLFRNFLSWQGILADKLLRELAIGALLNRYLLLAMRVCTPNDAINKAYIIVNTLPTVWLLPNSETLKNLELFIGYIKQTLESCDASNPPVFMQSSDKAKQILQRLHSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00919050;
90% Identity
iTF_00492222;
80% Identity
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