Dneo016964.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila neocordata
Gene Symbol
PAXBP1
Assembly
GCA_018903615.1
Location
JAEIGI010000002.1:17696606-17700598[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.5e-29 6.2e-25 88.4 0.8 4 272 635 843 632 845 0.94

Sequence Information

Coding Sequence
ATGTCGCTATTTCGAAAACCTAAGAAAATCCAGCGACGTGTATTTTCCAGCAATGCTGACGAAGATGACGATGACGGGTCTGCCATGTTGGATAATGTTGGGTCGAATGAAGACTATAGAATAGACAGTGTGCCAACTGGCAGACGTGATAAAGAAAGATCAAAGAACAAAAATAAAAGCCAAGAAGATAAGCCAAAGGCTTTGTTAAGTTTTGCGGATGATGAAGACGATGGTGAGGTGTTTCAGGTGCGAAAATCATCGCATAGCAAAAAGGTTATGCGTATGCTGGACAAGGAGCGTCGCAAAAAGAAGCGCGAGGAACGCACCGGTGGTGGTAGTAGCGGGTTTAGTGGACCAAGCGGTGATTATGGTGACGGACAGCAGCATCATGAAAATGGTAGTACACATCATTTAGAGTCGTCCAGTGCCAGTGCCAGTGTTTTGGGTTCTTCTTTGACGACATCTGCGAATTCTTCTTCCTCTAGTAGATATAATAAGAGTAAAAAAAGTGATAATGATATGATCCAAACCGAAATACGCACAGACGACTTTGTGTTGGTTGTCAAGAAATCGGAAACACCTGAGGCCATTCTAAATGGTCGTGCAGCCCTTTGTGCTGGCCGAGATGATATGAGCGATGATGACGATGGTCTGGATACTCGTGGATCAACAGTTGACGAACAGGAGAGATCTGCGCGCCATCGCTTCTCCAAGCCGGAGCATTTAAAGCAAATGCTTGAAAGTGGTTCCATACCCGATGCGGCTATGATACATGCAGCACGCAAGCGACGTCAAAGGGCCAGGGAACAGGGTGCCGGAGATTATATACCTGTTGAGGAGCCCAAAGAGCCAACAAAACTAAGCACACGCCTGCCCTGTGAAGATGTTGAGGGTGACCAGTCGGATGATGAGGAGCGAGTGGATATGAATGATATCACAGGGCGCAAGGAGCGTGAAGAGCGCCGAGAACAGTTTTATGCCGTTGAGAATGATTTGACCGAGGAAGATTCCGACCATGAGATGCACGAATGGGAGAATCAACAGATACGTAAGGGAGTGACGGGGGCACAATTGGTACATGCCCAGCATGAAACGGTGCTTTCACGATTTATGATTAAGCCCGCAATGCCGACAACTAGTTTAGATGATGAGGATGTGATGACCCTACAGCCACAATCCACCTCCAGCTTACTGGAACAAGCCTATGCGAAGCGTTCCTTGGAAAAATCTCTGCGCTCCGTAAATAAAGTTAAAAAGGTGGAAAAAGATAAAAAGACAGCAGCTTTGCGAACACCACAGGAGATGCGAACGGCTTTGCAAACGCGCCTACAGGAGCTTAAAGAAAGATCGGATGATCACACGGCAAGCATGGCAAGAATTAGTTTGGAATTAAAATCTTTAAAATTGCAACAATTGGAATGTCAGCAAAATGCTCCAACAGCTGCAGCCAAATATAAATTCTATCAAGAAGTTAAATGCTATGTGAACGATTTAGTCGATTGCCTAGCGGAAAAGTCTCCACACATTCAAGAGTTGGAAACGCGTTCCCTACAGCTATATGGAAAATATCAACGCTATTTGGTTAATCGTCGGCGGCAAGATGTTCGAGATCAGGCCAAAGAAATGGCCGAAGCTTCGAAACCCATTTCTTCATCCGCTCGTCGTACACCGGAGTATGAGGAACAAGTACGTAGGGCAGCGGAACGTGAAGGCCGCCGCACACGTCGTCGTTGTGAACGTGAACGTCAAGATATGTTATCCTCTCACCTCGATGGCATGTCCAGTGACGACGAAGTTGCAGATCAACAACAGGAACAACACCTAACAGCAATGGGCCAAATTAAATCCCAATCACTAGAGACATTCGATGATGTTAATGACGATTTTTACAAGATTGATCTTATATTGATAAAGTTCTATGCCTGGCGAAAGACAGATATGCCCTCTTATCAAGATGCTTTTGTTAGTCTATGCCTGCCAAAGTTATTGACACCTCTGGTGCGACATGAACTTTTATTTTGGTCACCTCTGTTGGATGAGTATGCGGATTTGGACACAATGCATTGGTACCAAGCATGCATGCTATATGCCTGTCAACCAGATGAGACAATTGAGCAATTAAAAAATGATCCCGATGTAAATTTGGTTCCGGTGCTAATAGAGAGAATTATTCTACCTAAGGTTTCATCTCTGGTAACCGAGTGCTGGGATCCTTTGTCTACCACACAAACTCTACGACTAGTGGGCTTTATTAATCGCTTGGGCCGCGAATTTCCATTGAATGCAGCAACAAATAAACAACTAACAAAACTCTTTGAGTCAATAATGGAGCGTATGCGTTTGGCTCTCGAAAACGATGTCTTTATACCAATCTTCCCAAAGCAAGTCCAAGAGGCCAAAACCTCATTCTTTCAGCGCCAGTTCTGTAGCGGATTAAAATTATTTCGGAACTTTCTTAGCTGGCAGGGTATATTGGCGGATAAACCGCTTAGAGAGCTGGCCATTGGGGCCTTACTCAATCGTTATCTTCTAATGGCTTTACGTGTCTGTTCTGCAAACGATGCTATTAACAAGGCCTACATCATAGTAAATACTCTGCCAACAGTGTGGCTATTGCCAAATAGTGAAACTTTACGAAATTTAGAGCTATTTATCAGCTACATAAGACAGACTCTAGATAGTTGTGATGCCACTAATCCCTTGTTTATGCAATCTTGCGATAAAGCAAAGGAAATTCTTCAAAGACTACATAGTACATAA
Protein Sequence
MSLFRKPKKIQRRVFSSNADEDDDDGSAMLDNVGSNEDYRIDSVPTGRRDKERSKNKNKSQEDKPKALLSFADDEDDGEVFQVRKSSHSKKVMRMLDKERRKKKREERTGGGSSGFSGPSGDYGDGQQHHENGSTHHLESSSASASVLGSSLTTSANSSSSSRYNKSKKSDNDMIQTEIRTDDFVLVVKKSETPEAILNGRAALCAGRDDMSDDDDGLDTRGSTVDEQERSARHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQRAREQGAGDYIPVEEPKEPTKLSTRLPCEDVEGDQSDDEERVDMNDITGRKEREERREQFYAVENDLTEEDSDHEMHEWENQQIRKGVTGAQLVHAQHETVLSRFMIKPAMPTTSLDDEDVMTLQPQSTSSLLEQAYAKRSLEKSLRSVNKVKKVEKDKKTAALRTPQEMRTALQTRLQELKERSDDHTASMARISLELKSLKLQQLECQQNAPTAAAKYKFYQEVKCYVNDLVDCLAEKSPHIQELETRSLQLYGKYQRYLVNRRRQDVRDQAKEMAEASKPISSSARRTPEYEEQVRRAAEREGRRTRRRCERERQDMLSSHLDGMSSDDEVADQQQEQHLTAMGQIKSQSLETFDDVNDDFYKIDLILIKFYAWRKTDMPSYQDAFVSLCLPKLLTPLVRHELLFWSPLLDEYADLDTMHWYQACMLYACQPDETIEQLKNDPDVNLVPVLIERIILPKVSSLVTECWDPLSTTQTLRLVGFINRLGREFPLNAATNKQLTKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKLFRNFLSWQGILADKPLRELAIGALLNRYLLMALRVCSANDAINKAYIIVNTLPTVWLLPNSETLRNLELFISYIRQTLDSCDATNPLFMQSCDKAKEILQRLHST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00919050;
90% Identity
iTF_00604086;
80% Identity
-