Lstr036881.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lathronympha strigana
Gene Symbol
-
Assembly
GCA_949128165.1
Location
OX421924.1:5067866-5071819[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00076 0.067 15.0 4.1 1 23 163 186 163 186 0.98
2 17 0.00066 0.058 15.2 0.5 1 23 195 218 195 218 0.96
3 17 0.026 2.3 10.1 0.7 2 23 231 253 231 253 0.97
4 17 0.0011 0.095 14.5 0.8 1 23 262 285 262 285 0.97
5 17 0.00023 0.02 16.6 1.4 1 23 297 320 297 320 0.96
6 17 8.9e-05 0.0078 17.9 0.6 2 23 347 369 346 369 0.96
7 17 0.0027 0.23 13.2 0.9 2 23 379 401 378 401 0.96
8 17 0.069 6 8.8 1.6 3 19 407 423 406 426 0.93
9 17 0.00089 0.078 14.7 0.5 2 21 431 450 430 453 0.94
10 17 0.071 6.3 8.7 1.4 3 23 463 484 462 484 0.95
11 17 0.043 3.8 9.4 3.2 1 23 489 512 489 512 0.95
12 17 0.00037 0.032 15.9 0.3 2 23 524 546 523 546 0.97
13 17 0.00059 0.052 15.3 0.4 1 23 569 592 569 592 0.94
14 17 0.92 81 5.2 0.1 2 23 599 620 598 620 0.88
15 17 0.081 7.1 8.6 0.7 2 23 627 648 626 648 0.97
16 17 0.035 3 9.7 0.1 1 23 714 736 714 736 0.96
17 17 0.22 20 7.2 3.0 1 23 742 765 742 765 0.96

Sequence Information

Coding Sequence
ATGACCTCAATTaagcaagaaaaaataaaacaagaagaCATTAAACcggacattaaaattaaaattgaaccCGAAGAAAGAAAGGATCCAACATCATATTTACCAGAAGAACCTATGGTCTatactttaaaaaagaaaaagaaaaaaaagaagcaTAGGCAAGTGGATCCCTTCAAAGATATAGAGGATAAAAAACCGGTGGAAGTGATAAAGGACTTTGAAATTGAGGAACCCATTCCCAGTTTAGATCCCGAGATCAATATTAAAGTTGAAAATATTGAAGTTGAATTGGATTTTAATGATTTTGCTGAAAATGGCGACCTATTGCTCGAAGGGCCTCAAAGCGAAGACAGCCAGGAACCGGAAATAAAAATCGAACAGCAGACCCATGAAGCGGCCATTCTAACCTTCGAAAGCGTTATCAACGAAAAAGACAAAACAGTTTTTGGATACAGCCAAGAAACAGGTATAAAGGCCGCACCCAACTACGTGTGCAAAATATGCCATCTAATATTTCAGTCGCAGAAAACTTTACGGATGCATCAGAAAAGAAAGCATAAAGTTTACAGAAAATCTTTCAAACACATATGCGATTACTGCGGTATGGCTTATGAGATGAAAAACAGTTTGGCAGCtcatattaaaagaaaacatgGACCTAATTCTTGTCCAGATGACAGGGAGGAAAGAACGTGTGAAATATGTGCACTAGTCTTCAAAGGAATGACTAGGTTAAGAATGCATATGAGAAGAAAACACAATCTCTTTGAGGATTCTTTCCAGTATGAATGCCAAGATTGTGGGCTCACTTATGATAAATATAGGAGTTTAGTTGTTCATAGACAAAGGAAGCATAGTAATGTTACCAAACCGGAAATAAATCAATGGTTTAACTGTCCCTTTTGCCCTAAAATCTTCACTAAACGAGAAACATATGCCCGACATGTTCAAAGAAAACACAGGATCGACGAAGAAGCGGAAGACAATATAGCCCCAGAATATCTAGAGAGCTGTGTTAATAAGGACAGTGGGGAGATATCTTGTAACGAATGTCCATTAGTCTTCTCATCTCTAAATTTCCTTAAACTCCATATGAGAAGAAAACATAATGCATTAAAAGAAGATTTCCGATTAAAATGTATGATCTGTAATTTGTCTTACGATAAAATTGAGAGTTTGAAAAGACATGTTAGGAGAAAACATGACAGTGGTGCTCATTGCGATGTGTGTAACAAACAGTTTGACACTAGGGAACAGTATTTAAACCATTCCCATGTGAAAGAAATTAAGGAATGCCCTATATGCGgattaatattttcttcacaAGGTGGTCTTGGAAAGCATTTAAGGTGTACACACAAAATTGATACACCCAAAACTGTATTCTGCAATGTGTGTAATGAAGGATTTCATGATAAAAGACAGTTGAAACCGCATTTACTGAAAGTGCATTTAAATGTGTCATACACCTGCAGGTTTTGTATGAAAGTGTTCAAAGCTAAAGAGAGTTACAGACGgcatattatgtttaaacaccCGGTACCAAGTCATACTACTAACGATCAGCAGAAATGTGAGCAGTGCACTGAGACTTTTGCAGACGAATTTGAGCTTAGTCGTCATGTAAATACAGTCCATTCTAAGAAGTTTGAATCCGAAAAtcctattattgaaataaaaaaagaggAAGATATAAAAGAGTTGTTTCAATGCACAAAATGTCCGGAAAACTATCCTACATGGGTACAACTTAGACTGCATTATGAGCAGAACCACCAGTTAGTACAAGACACTCAGTGTCAAATCTGTGGGCAAATTTTGCCTACAAACGAACTTGCCAAACACATAAAACAGGAACACACGGAAGAAACTACTATGGAGTGTAAATATTGCGAATTTAAAACGGCGATTAAAGCTAGTATGACGCAACATATGTTAAGACACAAAAATGCTACAACCATTCATTGTGAATATCCGAATTGCAGATTTAAGTCTTTCTATGAAGACGCTATGGTTAAACATAAGAAAAAACATGTCGACCAAGGTGTGAAATTGCAGTGTAGTAAATGCCCCTTCCAGTCtatgaataaatacattttaaggtaTCATGAAGAAGCGCATGTTACTGGTAAAAAAAGGTACATATGTGATCAGTGTGACTATGCTACTATACTACCTGCGAACTTAGTTCAACATAAGTACAAGCATTCTACCGAAAAGAGGTTTAAATGCGAATATTGCCCATTCGCTACTAAATATAATACGTCGTTACGTTTTCATGTTAAGAAAAAACACTGTGATCTCCCTTCTTTTGTTTGA
Protein Sequence
MTSIKQEKIKQEDIKPDIKIKIEPEERKDPTSYLPEEPMVYTLKKKKKKKKHRQVDPFKDIEDKKPVEVIKDFEIEEPIPSLDPEINIKVENIEVELDFNDFAENGDLLLEGPQSEDSQEPEIKIEQQTHEAAILTFESVINEKDKTVFGYSQETGIKAAPNYVCKICHLIFQSQKTLRMHQKRKHKVYRKSFKHICDYCGMAYEMKNSLAAHIKRKHGPNSCPDDREERTCEICALVFKGMTRLRMHMRRKHNLFEDSFQYECQDCGLTYDKYRSLVVHRQRKHSNVTKPEINQWFNCPFCPKIFTKRETYARHVQRKHRIDEEAEDNIAPEYLESCVNKDSGEISCNECPLVFSSLNFLKLHMRRKHNALKEDFRLKCMICNLSYDKIESLKRHVRRKHDSGAHCDVCNKQFDTREQYLNHSHVKEIKECPICGLIFSSQGGLGKHLRCTHKIDTPKTVFCNVCNEGFHDKRQLKPHLLKVHLNVSYTCRFCMKVFKAKESYRRHIMFKHPVPSHTTNDQQKCEQCTETFADEFELSRHVNTVHSKKFESENPIIEIKKEEDIKELFQCTKCPENYPTWVQLRLHYEQNHQLVQDTQCQICGQILPTNELAKHIKQEHTEETTMECKYCEFKTAIKASMTQHMLRHKNATTIHCEYPNCRFKSFYEDAMVKHKKKHVDQGVKLQCSKCPFQSMNKYILRYHEEAHVTGKKRYICDQCDYATILPANLVQHKYKHSTEKRFKCEYCPFATKYNTSLRFHVKKKHCDLPSFV