Alat033644.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014463.1:9579744-9582767[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0016 0.16 13.6 5.9 1 23 163 186 163 186 0.97 2 18 0.00033 0.033 15.7 0.9 1 23 195 218 195 218 0.96 3 18 0.02 2 10.1 0.7 2 23 231 253 231 253 0.97 4 18 0.0016 0.16 13.6 2.7 1 23 262 285 262 285 0.97 5 18 4.6e-05 0.0046 18.4 1.3 1 23 297 320 297 320 0.97 6 18 3.8e-05 0.0038 18.7 0.8 2 23 349 371 348 371 0.97 7 18 0.0016 0.16 13.6 1.2 2 23 381 403 380 403 0.96 8 18 0.099 9.9 7.9 1.6 3 19 409 425 408 428 0.93 9 18 0.00069 0.069 14.7 0.5 2 21 433 452 432 455 0.94 10 18 0.021 2.1 10.1 1.5 3 23 465 486 464 486 0.96 11 18 0.046 4.6 9.0 3.0 1 23 491 514 491 514 0.94 12 18 0.0045 0.45 12.2 0.1 2 23 527 549 526 549 0.90 13 18 0.035 3.5 9.4 1.4 1 23 573 596 573 597 0.94 14 18 0.68 68 5.3 0.1 2 23 603 624 602 624 0.91 15 18 0.012 1.2 10.8 1.3 2 23 631 652 630 652 0.97 16 18 3.6 3.6e+02 3.0 0.8 2 23 659 682 658 682 0.84 17 18 0.023 2.4 9.9 0.1 1 23 718 740 718 740 0.96 18 18 3.4 3.4e+02 3.1 4.0 1 23 746 769 746 769 0.96
Sequence Information
- Coding Sequence
- ATGTCTATCAAGCAAGGACAGATAAAATTAGAAGATATAAAACCAGACCTggacaaaataaaaatagaatatgAGGAAAGAAAAGACCCAACAACTTTCTTACCTGAGGAGCCCATGGTTTATGAgctaaaaaagaagaaaaagaaaaaaaagaagcaTAGACAAGAAGATCCATTCAAGGATATAGAAGACAAGAAACCTGTGGAAGTCATTAATGCTTTTGAAAATCTGGATGACGCAGAGCCCATGTTTGATGCTGAAGTTAATATCAAAGTGGAAAAGATTGAAGTAGAGTTAAATTTTAACGATtttgcCGACAATGGCGGTCTTCTACTTGAAGGCCCACAAAGCGAAGATAGCCAGGAACCGGAAGTGAAAATAGAAGAACAGAATCACGAGGCAGTCCTCCTCACATTCGAGAGCATCATCAATGACAAAACAGTCCTGGGCTACGGCTCGGGGGCAGGCATTGAAGCTGCTCCCAACCACGTTTGCAAAATCTGCCATTTAGTATTTCAATCGCAGAAAACTTTACGAATGCATCAAAAGCGAAAGCACAAAGCATTCAGAAAAACGTTCAAACACATCTGTGATTACTGTGGCATGTCATACGAGATGAAGAATAGCCTAGTTGCTCACATAAAGAGGAAACATGGACCGAATTCAGCCCCCGACGATAGAGAGGAACGGACGTGTGAAATATGTGCGCTGGTCTTCAAAGGCATGACTAGATTAAGAATGCATATGCGACGCAAGCACGGACTGTTTGAAGAGACATTCCAGCATGAATGTCATGAATGCGGGCTCACGTATGATAAGTACAGAAGTCTGGTCGTACATATTCAAAGAAAACATTCTAAAGTATCCAAGCCAGCTCCAACGCAGTGGTATAATTGCCCTTTTTGCCCTAAAGTTTTCACAAAGAGAGAGACTTACGCGAGACATGTGCAGAGGAAACACCGTATAAACGAAGATGGCGTTTTACAGGATAACATTTCGCAAGAGGTTTTGGATAGCTGCGTTAACCAAGAAACGGGGGAGATAACTTGTAAAGATTGCCCTCTCGTCTTCTCTTCGTTAAACTTCTTGAAACTACACATGAGAAGAAAGCATAATGCTTTGAAGGAGGATTTTAGGTTAAAATGCAGGATTTGTAATCTGTCCTATGATAAAATCGAGAGTCTGAAACGCCATGTGCGAAGGAAACATGACAATGGTGCCCATTGTGAAGTgtgcaacaaacaatttgacacgagAGAGACGTACTTAAACCATTCCCATGTAAAAGTTATCAAGGAATGCCCTATATGTGGCCTCATATTCTCCTCCCAAGGTGGCCTTGGAAAGCATCTGCGATGTACTCACAAAATGGACACGCCAAAAACTGttttttgcaatatttgcaaTGAAGGCTTCCATGACAAGAGACAATTGAAACCGCATCTCATGAAAGTGCATTTAAAAGTGTCGTATACTTGTAGATTTTGCATGAAAGTGTTTAAAGCAAAGGAGAGTTACAGGCGGCACATTTTGTTCAAGCACCCAGCACCACTGAATCAGACAACGAGCGAGCTTCAGATGTGTGAACAGTGTCCTGAAACTTTCCCAGACGAATTTGAGCTCAGCCGCCACGTAGATTTAGTCCATTCAAAGAAATTGAATACTGATGAAACTGGTGTCGAAATAAAAAAGGAGGATGTTGATGTAAAAGAGTTTTTTCAGTGCACAAAGTGCGCTGATAACTTCCCCACATGGGAACAGCTAAGATTGCATTATGAACAAAACCATCATTTGATACAGGACACTCAGTGTCAAATTTGCGGCCAAATCCTACCTACTACCGAATTAGCGAAACACATAAAACAATTACATACAGCTGACACCGTCATGCAATGTCAATATTGTGATTTCAAGACCACTATTAAAGCAAGCATGACGCAGCATATGTTGAGGCATAAGAATGCATCAACAATACGGTGTGATTATCCAGGTTGTAGATTCAAGTCGTTTTATGAAGACGCAATGAATAAGCACAAGCGGAAACATTCAGATCAAGGAGTAAAGCTTCAATGTATACGGTGTCCTTTTCAAActatgaataaatatattttaagataTCATGAGGAAGCACATGTGACTGGGAAAAAGAGGTACGCTTGTAATCAGTGCGACTATGCTACGATATTACCTGCGAACTTGGTGCAACACAAATATAAACATTCTGCAGAAAAAAGGTTCAAGTGCGAATTCTGTTCGTTCGCAACTAAGTATAATACGTCGTTACGTTTTCATGTTAAAAAGAAACACTGTGATCTCCCGTCTTTCAGTTAA
- Protein Sequence
- MSIKQGQIKLEDIKPDLDKIKIEYEERKDPTTFLPEEPMVYELKKKKKKKKKHRQEDPFKDIEDKKPVEVINAFENLDDAEPMFDAEVNIKVEKIEVELNFNDFADNGGLLLEGPQSEDSQEPEVKIEEQNHEAVLLTFESIINDKTVLGYGSGAGIEAAPNHVCKICHLVFQSQKTLRMHQKRKHKAFRKTFKHICDYCGMSYEMKNSLVAHIKRKHGPNSAPDDREERTCEICALVFKGMTRLRMHMRRKHGLFEETFQHECHECGLTYDKYRSLVVHIQRKHSKVSKPAPTQWYNCPFCPKVFTKRETYARHVQRKHRINEDGVLQDNISQEVLDSCVNQETGEITCKDCPLVFSSLNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDNGAHCEVCNKQFDTRETYLNHSHVKVIKECPICGLIFSSQGGLGKHLRCTHKMDTPKTVFCNICNEGFHDKRQLKPHLMKVHLKVSYTCRFCMKVFKAKESYRRHILFKHPAPLNQTTSELQMCEQCPETFPDEFELSRHVDLVHSKKLNTDETGVEIKKEDVDVKEFFQCTKCADNFPTWEQLRLHYEQNHHLIQDTQCQICGQILPTTELAKHIKQLHTADTVMQCQYCDFKTTIKASMTQHMLRHKNASTIRCDYPGCRFKSFYEDAMNKHKRKHSDQGVKLQCIRCPFQTMNKYILRYHEEAHVTGKKRYACNQCDYATILPANLVQHKYKHSAEKRFKCEFCSFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871612;
- 90% Identity
- iTF_01464417; iTF_00009370;
- 80% Identity
- -