Ccan018745.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637481.1:12365315-12368186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0025 0.2 13.3 5.8 1 23 170 193 170 193 0.97 2 17 0.00034 0.026 16.1 0.8 1 23 202 225 202 225 0.96 3 17 0.027 2 10.1 0.7 2 23 238 260 238 260 0.97 4 17 0.0006 0.047 15.3 1.7 1 23 269 292 269 292 0.97 5 17 0.00024 0.018 16.6 1.4 1 23 304 327 304 327 0.96 6 17 9.2e-05 0.0071 17.9 0.6 2 23 356 378 355 378 0.96 7 17 0.0027 0.21 13.2 0.9 2 23 388 410 387 410 0.96 8 17 0.091 7 8.4 1.5 3 19 416 432 415 435 0.93 9 17 0.0009 0.069 14.7 0.6 2 21 440 459 439 462 0.94 10 17 0.041 3.2 9.5 1.4 3 23 472 493 471 493 0.95 11 17 0.011 0.85 11.3 2.9 1 23 498 521 498 521 0.94 12 17 0.0011 0.082 14.5 0.2 3 23 534 555 532 555 0.96 13 17 0.00017 0.013 17.0 0.8 1 23 577 600 577 601 0.94 14 17 0.2 16 7.4 0.1 2 23 607 628 606 628 0.95 15 17 0.082 6.3 8.6 3.2 2 23 635 656 634 656 0.97 16 17 0.036 2.8 9.7 0.2 1 23 722 744 722 744 0.97 17 17 0.3 23 6.8 2.8 1 23 750 773 750 773 0.96
Sequence Information
- Coding Sequence
- atgtcaataaagcAAGAAAAATTTGAATATGAAGATGTTAAACCTGACTTGAAAGaccttaaaattaaaattaaacttgaACCGGTGGAGAGAAAGGATCCAACCTCTTTTCTGCCAGAAGAGCCCATGACCTATGagttaaagaagaagaaaaagaaaaaaaagaaacatagaCAAGAGGATCCGTTTAAGGACATAGAGGAGAAAACTCCAGTGGAAGTGATAAAAGATTTTGATACTTTTGATGAATCTGCACCATGTTTAGATCCTGAGGTCAATATTAAAgttgaaaatattgaagttgaaTTGGATTTTAATGATTTTGCAGAAAATGGCGGGCTAATGGTGGAAGGACCTCATAGTGAAGACAGTCAAGAACCAGAAGTGAAAATTGAACCACAAAATCATGAAGCTGTCATTCTCACGTTTGAAAGTGTGATCAATGAGAAGAACGATGAAACAGTTTTAGGTTACAGTCAGGAAACAGGAATTGAAGCTGCACCCAATCATGTCTGCAAGATTTGCCATCTAGTGTTCCAATCACAGAGAACTTTACGTATGCACCAGAAAAGAAAGCATCAAGCATACAGGAAGGCTTTTAAACATATATGTGATTACTGCGGCATGTCTTATGAGATGAAGAATAGCTTGGCTGCTCATATTAAAAGGAAACATGGCCCTAACTCGTCTCCAGACGATAAAGAGGAGCGGACATGTGAAATTTGTGCACTTGTATTCAAAGGGATGACGAGGCTAAGGATGCATATGCGGAGAAAACATGATCTCTTCGAAGACTCTTTCCAACATGAGTGCAATTATTGTGGACTAACCTATGACAAATATAGGAGCTTGATTGTCCATATACAAAGGAAACACACTAAAGTTACCAAACCAGTGCAAACGCAATGGTTCAACTGTCCGTTTTGCCCCAAAATCTTCACCAAACGAGAAACTTACGCGCGGCACGTGCAACGGAAGCATAGAATAAACGAAGATGGCACGGAAAAAGATAGTATAACACAGGAAATTCTAGAAAGCTGCGTTAACAAGGAAACTGGGGAGATATCGTGTAACGAATGCCCGCTTGTATTCTCGTCTCTGAATTTCTTAAAACTACACATGAGGCGGAAACATAATGCGTTGAAAGAGGACTTCCGATTGAAATGTATGATTTGTAACTTGTCTTATGATAAGATTGAGAGCCTTAAACGGCATGTGAGAAGAAAACATGATGGCGGTGCTCACTGTGAAGTATGTAATAAACAATTTGATACGCGAGAACAATATTTAAGTCATTCTCATGTCAAAGTAATAAAGGAATGCCCAATTTGCGGCTTAATATTTTCTTCAAAAGGCGGTTTAGGGAAGCATTTGAGGTGTACACATAAAATCGACTCGCCCAAGATTGTGTtctgtaatatttgtaatgagGGCTTCCATGATAAGCGGCAGTTGAAACCGCATTTATTAAAAGTGCATTTAAAGGTGTCATACACTTGTAGGTTTTGCTTGAAAGTGTTCAAAGCGAAGGAAAGTTACAGACGTCATATTTTGTTTAAACATCCAGCGCGAACTAATAGTAATAACGAGCTGCAGAACTGTGAGCAGTGTACGGAAACATTTCCAGATGAATTTGAACTCAGTCGCCATGTTAATACGGTACATTCTAAAAGAAGTGATGCAGACACTTTAATTGATATCAAGAAGGAGGAAGATGTAAAAGAGACGTTTCAATGCACAAAGTGCCCAGAAAACTATCCCACGTGGGACCAGCTTAGGGTACATTATGAAGAAAACCATCACACGGTGCAGGACACACAGTGTCAAATATGCGGCCAAATACTGCCTACAACCGAACTTGCAAAACATATAAAGACAGAACACACTGCTGACACGGTGCTTCAGTGTAAACATTGCGAATTCAAAACCACTATCAAAGCCAGTATGACACAGCATATGCTCAGACATAAAAACGCTACAACTATACATTGCGAATATACAGGATGTAGATTCAAGTCGTTTTACGAAGATGCAATGGTTAAGCATAAGAAAAAACATGTGGATCAGGGTGTTAAGTTACAATGTAGCAGATGTCCTTTCCAAACTATGAATAAGTACATTTTAAGATATCATGAAGAAGCGCATATTACCGGTAAAAAAAGATATAATTGTGACCAATGTGACTACGCTACTATACTACCTGCGAACTTGGTGCAGCATAAATATAAGCATTCTACAGAAAAGAGGTTCAGATGCGAATATTGTCCGTTTGCAACTAAATATAATACATCGTTACGTTTTCATGTTAAGAAAAAACACTGTGATCTCCCATCTTTCGTTTAA
- Protein Sequence
- MSIKQEKFEYEDVKPDLKDLKIKIKLEPVERKDPTSFLPEEPMTYELKKKKKKKKKHRQEDPFKDIEEKTPVEVIKDFDTFDESAPCLDPEVNIKVENIEVELDFNDFAENGGLMVEGPHSEDSQEPEVKIEPQNHEAVILTFESVINEKNDETVLGYSQETGIEAAPNHVCKICHLVFQSQRTLRMHQKRKHQAYRKAFKHICDYCGMSYEMKNSLAAHIKRKHGPNSSPDDKEERTCEICALVFKGMTRLRMHMRRKHDLFEDSFQHECNYCGLTYDKYRSLIVHIQRKHTKVTKPVQTQWFNCPFCPKIFTKRETYARHVQRKHRINEDGTEKDSITQEILESCVNKETGEISCNECPLVFSSLNFLKLHMRRKHNALKEDFRLKCMICNLSYDKIESLKRHVRRKHDGGAHCEVCNKQFDTREQYLSHSHVKVIKECPICGLIFSSKGGLGKHLRCTHKIDSPKIVFCNICNEGFHDKRQLKPHLLKVHLKVSYTCRFCLKVFKAKESYRRHILFKHPARTNSNNELQNCEQCTETFPDEFELSRHVNTVHSKRSDADTLIDIKKEEDVKETFQCTKCPENYPTWDQLRVHYEENHHTVQDTQCQICGQILPTTELAKHIKTEHTADTVLQCKHCEFKTTIKASMTQHMLRHKNATTIHCEYTGCRFKSFYEDAMVKHKKKHVDQGVKLQCSRCPFQTMNKYILRYHEEAHITGKKRYNCDQCDYATILPANLVQHKYKHSTEKRFRCEYCPFATKYNTSLRFHVKKKHCDLPSFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871612;
- 90% Identity
- iTF_01072853;
- 80% Identity
- -