Hsal041397.2
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990118.1:9617887-9621619[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0013 0.15 13.9 6.0 1 23 164 187 164 187 0.97 2 17 0.00054 0.061 15.1 0.5 1 23 196 219 196 219 0.96 3 17 0.039 4.3 9.3 0.8 2 23 232 254 232 254 0.97 4 17 0.0023 0.26 13.2 2.7 1 23 263 286 263 286 0.97 5 17 0.00014 0.016 17.0 1.3 1 23 298 321 298 321 0.97 6 17 8.6e-05 0.0096 17.7 0.4 2 23 350 372 349 372 0.96 7 17 0.0014 0.16 13.9 1.2 2 23 382 404 381 404 0.96 8 17 0.051 5.7 8.9 1.5 3 19 410 426 409 429 0.93 9 17 0.00024 0.027 16.3 0.1 2 23 434 456 433 456 0.94 10 17 0.033 3.7 9.5 1.4 3 23 466 487 465 487 0.95 11 17 0.014 1.6 10.7 3.3 1 23 492 515 492 515 0.94 12 17 0.0097 1.1 11.2 0.5 3 23 528 549 526 549 0.96 13 17 0.0015 0.17 13.8 1.0 1 23 570 593 570 594 0.94 14 17 0.77 86 5.2 0.1 2 23 600 621 599 621 0.88 15 17 0.027 3 9.8 1.1 2 23 628 649 627 649 0.97 16 17 0.037 4.1 9.4 0.1 1 23 715 737 715 737 0.96 17 17 0.18 21 7.2 3.0 1 23 743 766 743 766 0.96
Sequence Information
- Coding Sequence
- ATGTCGATAAAGCAAGAAAACATTAAATGTGAAGACATTAAACCTGACTTGAGTAAAATTAAGATTGAACCAGAGGAAAGAAAGGATCCTACTTCTTTTCTACCTGAAGAACCCATGACTTAtgaactgaaaaagaaaaagaaaaaaaagaagcatAAACAAGAGGATCCTTTCAAAGATATAGAGGAGAAAACTCCTGTTGAAATAGTAAAGGTTGGCGAGTCTGAGTCAATGGTTGAATTTGTGCCGAGTCTTGATCCTGAAGTCAACATAAAGGTTGAGAATATTGAAGTTGAGCTGGACTTTAATGATTTCGCGGAAAATGGCGGCCTTATGCTTGAAGGACCTTATAGCGAAGACAGTCAGGAACCGGAAGTGAAAATCGAACCACAGAATCATGAAGCTGTCATTCTCACGTTTGAGAGCGTCATCAATGACAAAACAGTCTTAGGTTACAGCCAGACTGCTGGTGTAGAGGCCGCGCCCAACCATGTATGCAAGATATGCCATCTAGTGTTTCAAACTCAGAAAACTTTACGTATGCACCAGAAAAGGAAGCACCAGGTGTTCAGAAAGTCGTTTAAACACATATGTGATTACTGCGGCATGGCTTATGAGATGAAGAACAGTTTAGCAGCTCACATTAAGAGGAAACATGGGCCTAATTCGTTGCCAGATGATAGCGAGGAGCGGACGTGTGATGTTTGTGCACTAGTATTCAAAGGGATGACTAGGTTAAGGATGCACATGAGGAGAAAGCATGGCTACTTTGAAGACTCTTTCCAGCATGAATGTGAACATTGTGGACTCACCTATGACAAGTATAGGAGCTTAGTTGTtcatatacaaagaaaacactCGAAAACTCCAAAACCAGCGCCAACGCAATGGTACAACTGTCCGTTTTGCCCTAAAATCTTTACTAAAAGAGAAACTTACGCCAGACACGTGCAAAGAAAGCATAGGATCAACGATAATGATGCGGAAACGGACAATTTAACACCGAAGTTATTAGATAGCTGCATTAACAAAGAAACTGGAGAGATATCTTGCAATGAATGCCCTCTAGTCTTTTCGACTATAAATTTCCTTAAAGTACATATGAGACGAAAACATAACGCGTTAAAGGAGGACTTCAGATTGAAATGTATGATTTGTAATTTGTCGTATAATAAGATTGAAAGTCTTAAGCGACATGTAAGGAGAAAACACGACAGTGGTGCTCATTGCGAAGTGTGCAACAAACAGTTTGATACGAGAGAGCAGTATTTAAATCATTCCCACATAAAAGTAATAAAGGAATGCCCAATCTGTGGCCTAATTTTTTCATCCCAAGGAGGTTTGGGGAAGCATTTGAAGTTTACTCACAAACTCGATACACCGAAGACTgtgttttgtaatatttgtaatgaaGGTTTCCATGATAAGCGACAATTGAAACCGCATTTATTAAAAGTGCATTTAAAGGTGTCGTATACTtgtaagttttgtatgaaagtgTTCAAAGCGAAGGAGAGTTACAAACGTCACATTTTGTTCAAACATCCAGTGCCAAGTCAGACTAATAGTGAACCACAAAACTGCGAGCAGTGTACGGAGACTTTCCCAGATGAATTGGAACTTAGTCGTCATGTTCACACGGTGCACGCTAAGAAATTAGATTCAGATGTTGTCGAAGTTAAGAAGGAAGAAGATATAAAAGAGTTGTTCCAGTGCACAAAATGCCCAGAAAGCTATCCCCTGTGGGAGCAACTCAGGTTACATTACGAACAGAACCACCATTTAATTCAGGACACGCAGTGTCAAATATGTGGTCAAATCCTTCCTACAAACGAGCTAGCCAAACATATAAAGCAGCTACACACCGTTGACGCAGTCTTGGAATGTAAATATTGCGAATTTAAAACCACAATTAAAGCGAGTATGACGCAGCATATGCTGCGGCACAAAAACGCAACAACTATCCATTGTGAATATCCGGGTTGTAGATTCAAGTCGTTTTATGAGGATGCGATGaataagcataaaaaaaaacatgtcgaTCAGGGTGTTAAGTTACAGTGTAGTCGATGTCCGTTTCAAACTATGAATAAGTATATTTTGAGGTATCATGAAGAGGCACATATTACGGGGAAGAAGAGGTATGCGTGTGATCAATGTGATTATGCTACTATACTTCCTGCTAACTTGGTGCAACATAAATATAAGCATTCGGCAGAGAAGAGGTTCAAATGCGAATATTGCCCGTTTGCCACTAAATATAATACGTCGTTACGTTTTCATGTTAAGAAAAAACACTGTGATCTCCCGTCTTTCAGTTAA
- Protein Sequence
- MSIKQENIKCEDIKPDLSKIKIEPEERKDPTSFLPEEPMTYELKKKKKKKKHKQEDPFKDIEEKTPVEIVKVGESESMVEFVPSLDPEVNIKVENIEVELDFNDFAENGGLMLEGPYSEDSQEPEVKIEPQNHEAVILTFESVINDKTVLGYSQTAGVEAAPNHVCKICHLVFQTQKTLRMHQKRKHQVFRKSFKHICDYCGMAYEMKNSLAAHIKRKHGPNSLPDDSEERTCDVCALVFKGMTRLRMHMRRKHGYFEDSFQHECEHCGLTYDKYRSLVVHIQRKHSKTPKPAPTQWYNCPFCPKIFTKRETYARHVQRKHRINDNDAETDNLTPKLLDSCINKETGEISCNECPLVFSTINFLKVHMRRKHNALKEDFRLKCMICNLSYNKIESLKRHVRRKHDSGAHCEVCNKQFDTREQYLNHSHIKVIKECPICGLIFSSQGGLGKHLKFTHKLDTPKTVFCNICNEGFHDKRQLKPHLLKVHLKVSYTCKFCMKVFKAKESYKRHILFKHPVPSQTNSEPQNCEQCTETFPDELELSRHVHTVHAKKLDSDVVEVKKEEDIKELFQCTKCPESYPLWEQLRLHYEQNHHLIQDTQCQICGQILPTNELAKHIKQLHTVDAVLECKYCEFKTTIKASMTQHMLRHKNATTIHCEYPGCRFKSFYEDAMNKHKKKHVDQGVKLQCSRCPFQTMNKYILRYHEEAHITGKKRYACDQCDYATILPANLVQHKYKHSAEKRFKCEYCPFATKYNTSLRFHVKKKHCDLPSFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871612;
- 90% Identity
- iTF_00149762;
- 80% Identity
- -