Tvir023998.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- -
- Assembly
- GCA_963241965.1
- Location
- OY725197.1:7755919-7759947[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0074 0.59 11.4 7.0 1 23 163 186 163 186 0.95 2 17 0.0003 0.024 15.7 0.9 1 23 195 218 195 218 0.96 3 17 0.018 1.4 10.1 0.7 2 23 231 253 231 253 0.97 4 17 0.0014 0.11 13.6 2.7 1 23 262 285 262 285 0.97 5 17 9.1e-06 0.00073 20.5 1.7 1 23 297 320 297 320 0.97 6 17 3.4e-05 0.0027 18.7 0.8 2 23 349 371 348 371 0.97 7 17 0.0014 0.11 13.6 1.2 2 23 381 403 380 403 0.96 8 17 0.051 4.1 8.7 1.3 3 19 409 425 408 428 0.93 9 17 0.00062 0.05 14.7 0.5 2 21 433 452 432 455 0.94 10 17 0.046 3.7 8.8 1.2 3 23 465 486 464 486 0.94 11 17 0.041 3.3 9.0 3.0 1 23 491 514 491 514 0.94 12 17 0.00091 0.073 14.2 0.1 2 23 526 548 525 548 0.94 13 17 0.011 0.84 10.9 2.4 1 23 572 595 572 596 0.96 14 17 1.7 1.4e+02 3.9 0.1 2 23 602 623 601 623 0.85 15 17 0.022 1.7 9.9 1.5 2 23 630 651 629 651 0.97 16 17 0.021 1.7 9.9 0.1 1 23 717 739 717 739 0.96 17 17 3.1 2.4e+02 3.1 4.0 1 23 745 768 745 768 0.96
Sequence Information
- Coding Sequence
- ATGTCAATCAAGCAAGGACACATAAAATTAGAAGATATAAAACCAGACcctgacaaaataaaaatagaatatgAGGAAAGAAAAGACCCTACAACTTTCTTGCCTGAGGAGCCTATGGTTTATGaattaaaaaagaagaaaaagaaaaagaaaaagcatAGACAAGAAGATCCATTTAAGGATATAGAAGATAAGAAACCTGTGGAAGTGATTAATGCTTTTGAAAATCTTGAAGATGCTGTGCCAATGTTTGATGCCGAAGTTAATATTAAAGTGGAAAATATTGAAGTAGAGCTAAATTTTAATGATTTTGCTGACAATGGCGGTCTTTTACTCGAAGGTCCACAAAGCGAAGATAGCCAAGAACCGGAAGTAAAAATAGAAGAACAGAATCATGAAGCAGTCATTCTTACATTCGAGAGTGTCATCAATGACAAAACAGTGCTCGGTTATAGCTCGGGAGTAGGCACGGAAGCTGCTCCAAACCACTTTTGCAAAATCTGCCACCTAGTATTCCAGTCACAGAAAACTTTACGAATGCATCAAAAGCGAAAGCACAAAGTATTCAGAAAAACGTTTGAACATATCTGTGATTACTGTGGCATGTCATACGAAATGAAGAATAGCCTAGTTGCTCACATAAAGAGGAAACACGGACCGAATTCGGCCCCTGACGATAGAGAAGAGCGGACGTGTGAAATTTGCGCGCTGGTTTTCAAAGGCATGACTAGATTAAGAATGCATATGCGAAGAAAACATGGATTGTTTGAAGAGTCCTTCCAACATGAATGTCATGAATGCGGTCTTACATACGATAAGTACAGGAGTCTGGTCGTCCATATTCAAAGAAAGCATTCTAAAGTGTCCAAACCTGTACCAACACTGTGGTTCAATTGTCCATTTTGCCCTAAAGTCTTTACGAAGAGAGAGACTTACGCGAGACATATGCAGAGGAAACACCGTATTAACGAAGATGGTGCATTACAGGATAACATTTCACAGGAGTTCTTAGATAGCTGCGTTAATCAAGATACTGGAGAGATTACTTGTAAAGATTGCCCTCTCGTCTTCTCTTCGTTAAATTTCTTGAAACTTCACATGAGAAGAAAGCACAATGCTTTGAAGGAGGATTTTAGGTTAAAGTGCAGGATTTGTAACCTGTCATATGATAAAATCGAGAGTCTGAAACGCCACGTGCGAAGGAAACATGACAATGGTGCCCATTGTGAAGTGTGCGACAAACAATTTGATACGAGAGAGACATATTTGAACCATTCCCATGTTAAAGTTATAAAGGAATGCCCTATATGCGGCCTCATATTCTCTTCGCAAGGTGGTCTTGGAAAGCATCTGCGATGTACCCACAAAATAGACACACCAAAAACTGTATTTTGCAATATTTGTAATGAAGGTTTCCATGATAAAAGACAGTTGAAACCGCATGTCTTAAAAGTGCATTTAAAAGTGTCGTATACTTGTAGATTTTGCATGAAAGTGTTTAAAGCAAAGGAGAGTTACAGACGGCACATTTTGTTTAAGCACCCAGCGCCAGACCAGACTACAAGCGAACTACAGACGTGTGAACAGTGTCCTGAAACTTTTCCAGACGAATTTGAGCTTAGCCGCCATGTTAATTTAGCCCATTCAAAGAAATTGAATGCTGATGAGACTGCAGTTGAGATAAAAAAGGAGGATATTGATGCGAAAGAGTTTTTTCAGTGCACAAAGTGTACTGATAGCTTCTCAGCATGGGAGCAGCTTAGATTACATTATGAGAAAAACCATCATTTGGTGCAGGATACACAGTGTCAAATTTGCGGCCAAATCCTGCCTACTACTGAACTAGCTAAACACGTAAAACAATTACATACAGCTGACACCGTCGTGAAATGTAAATATTGTGAGTTCAAGACCACAATTAAAGCAAGCATGACGCAGCATATGTTGAGGCATAAGAATGCATCAACTATGCACTGCGAATACCCAGGGTGTAGATTCAAGTCGTTTTATGAAGACGCAATGAACAAGCATAAGAGGAAACACTCGGATCAAGGAGTTAAGTTACAGTGTATACGGTGTCCTTTTCAAactatgaataaatatattttaaggtaCCATGAAGAAGCTCACGTGACTGGGAAAAAAAGGTACGCATGTAATCAATGCGACTATGCTACAATATTACCTGCGAACTTGGTGCAACATAAATATAAGCATTCAGCAGAAAAAAGGTTTAAATGCGAATTCTGTTCGTTCGCAACTAAGTATAATACGTCGTTACGTTTTCATGTTAAGAAGAAACACTGTGATCTCCCGTCTTTCAGTTAA
- Protein Sequence
- MSIKQGHIKLEDIKPDPDKIKIEYEERKDPTTFLPEEPMVYELKKKKKKKKKHRQEDPFKDIEDKKPVEVINAFENLEDAVPMFDAEVNIKVENIEVELNFNDFADNGGLLLEGPQSEDSQEPEVKIEEQNHEAVILTFESVINDKTVLGYSSGVGTEAAPNHFCKICHLVFQSQKTLRMHQKRKHKVFRKTFEHICDYCGMSYEMKNSLVAHIKRKHGPNSAPDDREERTCEICALVFKGMTRLRMHMRRKHGLFEESFQHECHECGLTYDKYRSLVVHIQRKHSKVSKPVPTLWFNCPFCPKVFTKRETYARHMQRKHRINEDGALQDNISQEFLDSCVNQDTGEITCKDCPLVFSSLNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDNGAHCEVCDKQFDTRETYLNHSHVKVIKECPICGLIFSSQGGLGKHLRCTHKIDTPKTVFCNICNEGFHDKRQLKPHVLKVHLKVSYTCRFCMKVFKAKESYRRHILFKHPAPDQTTSELQTCEQCPETFPDEFELSRHVNLAHSKKLNADETAVEIKKEDIDAKEFFQCTKCTDSFSAWEQLRLHYEKNHHLVQDTQCQICGQILPTTELAKHVKQLHTADTVVKCKYCEFKTTIKASMTQHMLRHKNASTMHCEYPGCRFKSFYEDAMNKHKRKHSDQGVKLQCIRCPFQTMNKYILRYHEEAHVTGKKRYACNQCDYATILPANLVQHKYKHSAEKRFKCEFCSFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871612;
- 90% Identity
- iTF_00010457;
- 80% Identity
- -