Cfag029402.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750813.1:4319882-4324148[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00086 0.055 14.9 4.1 1 23 166 189 166 189 0.98 2 17 0.00022 0.014 16.8 0.8 1 23 198 221 198 221 0.97 3 17 0.029 1.9 10.1 0.7 2 23 234 256 234 256 0.97 4 17 0.00086 0.055 15.0 0.6 1 23 265 288 265 288 0.97 5 17 0.00026 0.017 16.6 1.4 1 23 300 323 300 323 0.96 6 17 0.0001 0.0065 17.9 0.6 2 23 352 374 351 374 0.96 7 17 0.003 0.19 13.2 0.9 2 23 384 406 383 406 0.96 8 17 0.1 6.5 8.4 2.8 3 19 412 428 411 431 0.93 9 17 0.001 0.065 14.7 0.5 2 21 436 455 435 458 0.94 10 17 0.081 5.2 8.7 1.4 3 23 468 489 467 489 0.95 11 17 0.067 4.3 9.0 3.0 1 23 494 517 494 517 0.94 12 17 0.0027 0.17 13.4 1.0 2 23 529 551 528 551 0.96 13 17 0.00081 0.052 15.0 0.8 1 23 574 597 574 597 0.94 14 17 1.3 82 5.0 0.4 2 23 604 624 603 625 0.90 15 17 0.075 4.8 8.8 1.8 2 23 632 653 631 653 0.97 16 17 0.016 1 10.9 0.2 1 23 719 741 719 741 0.97 17 17 0.25 16 7.2 3.0 1 23 747 770 747 770 0.96
Sequence Information
- Coding Sequence
- ATGACATCAATAAAacaagaaaaaattaaaactgaaGACATCAAACCGgacctaaataaaattaaacttgaaCCCGAAGAAAGAAAAGATCCAACATCTTATTTACCGGAAGAACCCATGGTTTATACGttaaagaagaaaaagaaaaaaaagaagcaTAGACAAGAGGATCCTTTCAAAGACATAGAGGATAAAAAACCGGTGGAGGTGATAAAGGATTATGAGGTTGAGGTCGAGTCTGTACCGGGTTTGGATCCGGAGATCAGTATTAAAGTTGAGAACATTGAAGTGGAATTGGATTTTCATGATtTTGCGGAAAATGGCGGACTAATGGTCGAAGGACCTCAAAGCGAGGACAGTCAGGAGCCAGAAATAAAAATCGAACCACAGACCCACGAAGCGGCTATACTTACGTTCGAGAGCATTATCAACGAAAAGACAGACAAAACTGTTTTAGGTTACAGTCAAGAAACAGGTATAGAAGCCGCACCAAACTATGTCTGCAAAATATGCCATTTAATATTTCAATCTCAGAAAACTTTACGTATGCACCAAAAAAGAAAGCATAAAGTATACAGAAAGTCATTTAAACACGTATGCGATTACTGTGGAATGTCTTATGAGATGAAGAACAGTTTAGCAGCTCATATAAAAAGAAAACATGGTCCTAATTCGTCCCCAGACGATAGAGAGGAGAGAACATGTGAGATCTGTGCGTTAGTGTTCAAAGGAATGACAAGATTACGAATGCATATGAGAAGAAAGCATAATCTCTTTGAAGACTCTTTTCAATATGAGTGCGAAGATTGCGGACTGACATATGATAAGTATAGGAGCTTAGTTGTTCATAGACAAAGAAAGCATACAAACGTTACTAAACCGGAACCAACTCAATGGTTCAACTGTCCATTTTGCCCTAAAATCTTTACTAAACGAGAAACTTACGCGAGACATGTACAAAGAAAGCATAGAATCAACGAAGATGGTGCAGAGAATGATAATATATCCCAAGAGTTTCTAGAAAGCTGTGTTAATAAAGACACTGGGGAGATATCTTGTAACGAGTGTCCACTAGTCTTCTCCTCTTTAAATTTCCTAAAACTGCATATGAGACGAAAACACAACGCGTTAAAAGAAGACTTCAGATTGAAATGTATGATTTGTAATCTATCGTATGATAAGATTGAGAGTTTAAAACGGCATGTAAGAAGAAAACACGACAGCGGCGCCCATTGTGAAGTGTGCAATAAACAGTTTGATACTAGAGAACATTATTTAAACCATTCCCATGTAAAAGTGATAAAAGAATGTCCAATATGTGGTTTAATATTTTCTTCGCAAGGCGGTTTGGGAAAGCATTTACGGTGTACACACAAAATTGATACACCGAAGACTGTGTTCTGTAATGTTTGTAATGAAGGTTTCCATGATAAGAGACAGTTGAAACCACATCTATTGAAAGTGCATTTAAATGTGTCATACACATGTAGGTTTTGTATGAAAGTGTTCAAAGCTAAAGAGAGTTACAGACGTCACATTTTGTTCAAACATCCAGCACCGAGTCGTGATAATAACGAGCAACAGAAGTGCGAGCAGTGTGCTGAAACTTTTTCAGACGAATTTGAACTCAGTCGTCATGTACACACGGTGCATTCTAAGAAGTTAGAATCTGAGAATCCTTTAGTTGAAATCAAGAAGGAAGAAGATATAAAAGAGTTGTTTCAATGCACAAAGTGTCCAGAAAACTATCAAACTTGGGATCAACTTAGGTTACACTATGAGCAGAACCACCAGTTAGTTCAAGACACGCAATGTCAAATATGCGGCCAAATCCTCCCTACGATCGAACTTGCCAAACATATAAAGCAGCATCATACAGAAGAGACTGTCATGGAGTGTAAATACTGCAAGTTTAAAACCACTATTAGAGCCAGTATGACACAACATATGTTAAGACACAAAAATGCTACCACCATCCATTGTGAATACCCTGGCTGTAGATTCAAATCATTTTATGAGGATGCAATggttaaacataagaaaaaacaTGTTGATCAAGGCGTGAAACTACAATGTAGTAGATGTCCTTTTCAAACTATGAATAAGTACATTTTAAGGTATCATGAAGAAGCTCATGTAACCGGCAAGAAAAGATACACTTGTGACCAGTGTGACTATGCTACTATACTACCTGCTAATTTGGTACAACATAAGTATAAGCATTCTACGGAAAAAAGATTCAAATGCGAATATTGCCCGTTCGCTACTAAATATAATACATCGTTACGTTTTCATGTTAAGAAAAAGCACTGTGATCTCCCGTCTTTTGTTTGA
- Protein Sequence
- MTSIKQEKIKTEDIKPDLNKIKLEPEERKDPTSYLPEEPMVYTLKKKKKKKKHRQEDPFKDIEDKKPVEVIKDYEVEVESVPGLDPEISIKVENIEVELDFHDFAENGGLMVEGPQSEDSQEPEIKIEPQTHEAAILTFESIINEKTDKTVLGYSQETGIEAAPNYVCKICHLIFQSQKTLRMHQKRKHKVYRKSFKHVCDYCGMSYEMKNSLAAHIKRKHGPNSSPDDREERTCEICALVFKGMTRLRMHMRRKHNLFEDSFQYECEDCGLTYDKYRSLVVHRQRKHTNVTKPEPTQWFNCPFCPKIFTKRETYARHVQRKHRINEDGAENDNISQEFLESCVNKDTGEISCNECPLVFSSLNFLKLHMRRKHNALKEDFRLKCMICNLSYDKIESLKRHVRRKHDSGAHCEVCNKQFDTREHYLNHSHVKVIKECPICGLIFSSQGGLGKHLRCTHKIDTPKTVFCNVCNEGFHDKRQLKPHLLKVHLNVSYTCRFCMKVFKAKESYRRHILFKHPAPSRDNNEQQKCEQCAETFSDEFELSRHVHTVHSKKLESENPLVEIKKEEDIKELFQCTKCPENYQTWDQLRLHYEQNHQLVQDTQCQICGQILPTIELAKHIKQHHTEETVMECKYCKFKTTIRASMTQHMLRHKNATTIHCEYPGCRFKSFYEDAMVKHKKKHVDQGVKLQCSRCPFQTMNKYILRYHEEAHVTGKKRYTCDQCDYATILPANLVQHKYKHSTEKRFKCEYCPFATKYNTSLRFHVKKKHCDLPSFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871612;
- 90% Identity
- iTF_00871612;
- 80% Identity
- -