Camp001147.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419677.1:3674566-3677390[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00069 0.037 14.9 4.1 1 23 165 188 165 188 0.98 2 17 0.0015 0.082 13.9 0.8 1 23 197 220 197 220 0.96 3 17 0.023 1.3 10.1 0.7 2 23 233 255 233 255 0.97 4 17 0.00069 0.037 15.0 0.6 1 23 264 287 264 287 0.97 5 17 0.00021 0.011 16.6 1.4 1 23 299 322 299 322 0.96 6 17 8.1e-05 0.0044 17.9 0.6 2 23 351 373 350 373 0.96 7 17 0.0024 0.13 13.2 0.9 2 23 383 405 382 405 0.96 8 17 0.02 1.1 10.3 0.8 2 19 410 427 410 430 0.93 9 17 0.0008 0.044 14.7 0.5 2 21 435 454 434 457 0.94 10 17 0.065 3.5 8.7 1.4 3 23 467 488 466 488 0.95 11 17 0.053 2.9 9.0 3.0 1 23 493 516 493 516 0.94 12 17 0.011 0.6 11.2 0.5 3 23 529 550 527 550 0.96 13 17 0.015 0.83 10.7 0.2 1 23 573 596 573 596 0.94 14 17 2 1.1e+02 4.0 0.1 2 23 603 624 602 624 0.87 15 17 0.17 9 7.5 2.7 2 23 631 652 630 652 0.97 16 17 0.013 0.7 10.9 0.2 1 23 718 740 718 740 0.97 17 17 0.32 17 6.5 2.8 1 23 746 769 746 769 0.96
Sequence Information
- Coding Sequence
- ATGTCAATAAAACAAGAAAAAATAAAAACTGAAGATATCAAACCAGACCTAAATAAAATTAAAATTGAACCGGAAGAAAGAAAAGATCCGACATCCTATTTACCGGAAGAACCCATGGTTTATACATTAAAGAAGAAAAAGAAAAAAAAGAAGCATAGACAAGAGGACCCTTTCAAAGACATAGAGGATAAAAAACCGGTGGAGATGATAAAGGATTATGAAGTTGAGGTTGAGTCTGTACCGAGTTTGGATCCCGAGATTAGTATTAAAGTTGAGAACATTGAAGTTGAACTTGATTTTCATGATTTTGCGGAAAATGGCGGACTAATGGTCGAAGGACCTCAAAGCGAGGACAGTCAGGAGCCGGAAATAAAAATCGAACAACAGACCCACGAAGCGGCAATTCTTACATTCGAGAGCATTATCAACAACAAGACAGACAAAACCGTTTTAGGTTACAGTCAAGAAACAGGCATAGAAGCCGCACCTAACTATGTCTGCAAAATATGCCATTTAATATTTCAATCTCAGAAAACTTTACGTATGCACCAAAAAAGAAAGCATAAAGTCTACCGAAAATCATTTAAACACATATGCGATTACTGTGGAATGTCTTATGAAATGAAGAACAGTTTAGGAGCTCATATAAAAAGAAAACATGGCCCTAATTCGTCCCCAGATGATCGAGAGGAGAGGACATGTGAGATCTGTGCGTTAGTGTTCAAAGGGATGACAAGATTAAGAATGCATATGAGAAGAAAGCATAATCTCTTTGAAGACTCTTTTCAATATGAGTGTGAAGATTGCGGACTGACATATGATAAGTATAGGAGTTTAGTTGTTCATAGACAAAGAAAGCATACAAACATTACTAAACCAGAACCAACTCAATGGTTCAACTGTCCGTTTTGTCCTAAAATCTTTACTAAACGAGAAACTTACGCGAGACATGTACAAAGAAAACACAGGATTAATGAAGATGGTGCAGAGAATGATAATATATCCCAAGAGTTTCTAGAAACCTGTGTTAATAAAGACACTGGGGAAATATCATGTAACGAATGTCCTCTAGTCTTCTCCTCATTAAATTTCCTAAAACTGCATATGAGACGAAAACACAATGCGTTAAAAGAAGACTTTAGATTGAAGTGTATGATCTGTAACTTGTCATATGATAAGATTGAGAGTCTTAAACGCCATGTGAGAAGAAAACACGACGGTGGCGCCCGTTGTGAAGTGTGCAATAAACAGTTTGATACTAGAGAACAGTATTTAAACCATTCCCATGTAAAAGTGATAAAGGAATGTCCAATATGTGGTTTGATATTCTCTTCGCAAGGTGGTTTAGGAAAGCATTTACGGTGTACACACAAAATTGACACACCGAAGACTGTGTTCTGCAATGTATGTAACGAAGGTTTCCATGATAAGAGACAGTTGAAACCGCATTTACTAAAAGTGCATTTAAATGTGTCATACACTTGTAGGTTTTGTATGAAAGTGTTCAAAGCTAAGGAGAGTTACAGACGTCACATTTTGTTTAAACATCCAGCACCAAATCGCGATAATAACGAGCAACAGAACTGCGAGCAATGTGCTGAAACTTTTGCAGACGAGTTTGAACTCAGTCGTCATGTACACACGGTACATTCTAAGAAGTTAGAATCTGAGAATTCTTTAGTTGAAATCAAGAATGAAGAAGATATTAAAGAGTTGTTTCAATGCACGAAGTGTCCAGTAAACTATCCAATTTGGGATCAGCTTAGGTTACACTATGCGCAGAACCACCAGTTAGTCCAAGACACTCAATGTCAAATATGCGGGCAAATCCTCCCTACGATCGAACTAGCCAAACATATAAAGCAGCTCCACACAGAAGACACTGTCATGGAGTGTAAACACTGCGAGTTTAAAACTACCATTAGAGCTAGTATGACACAGCATATGCTAAGACACAAAAATGCTACTACGATCCATTGTGAATATCCAGGTTGTAGATTCAAATCATTCTATGAGGACGCAATGGTTAAACATAAGAAAAAACATGTTGACCAAGGTGTAAAACTACAATGTAGTAGATGTCCTTTTCAAACTATGAATAAGTACATTTTAAGGTATCACGAAGAAGCTCACGTCACTGGCAAGAAGAGATACACTTGTGACCAATGTGACTATGCTACTATACTACCCGCTAACTTGGTACAACATAAGTATAAGCATTCAACGGAAAAAAGGTTCAAATGCGAATACTGCCCGTTCGCTAGTAAATATAATACATCGTTACGTTTCCATGTTAAGAAAAAGCACTGTGATCTCCCGTCTTTTGTTTGA
- Protein Sequence
- MSIKQEKIKTEDIKPDLNKIKIEPEERKDPTSYLPEEPMVYTLKKKKKKKKHRQEDPFKDIEDKKPVEMIKDYEVEVESVPSLDPEISIKVENIEVELDFHDFAENGGLMVEGPQSEDSQEPEIKIEQQTHEAAILTFESIINNKTDKTVLGYSQETGIEAAPNYVCKICHLIFQSQKTLRMHQKRKHKVYRKSFKHICDYCGMSYEMKNSLGAHIKRKHGPNSSPDDREERTCEICALVFKGMTRLRMHMRRKHNLFEDSFQYECEDCGLTYDKYRSLVVHRQRKHTNITKPEPTQWFNCPFCPKIFTKRETYARHVQRKHRINEDGAENDNISQEFLETCVNKDTGEISCNECPLVFSSLNFLKLHMRRKHNALKEDFRLKCMICNLSYDKIESLKRHVRRKHDGGARCEVCNKQFDTREQYLNHSHVKVIKECPICGLIFSSQGGLGKHLRCTHKIDTPKTVFCNVCNEGFHDKRQLKPHLLKVHLNVSYTCRFCMKVFKAKESYRRHILFKHPAPNRDNNEQQNCEQCAETFADEFELSRHVHTVHSKKLESENSLVEIKNEEDIKELFQCTKCPVNYPIWDQLRLHYAQNHQLVQDTQCQICGQILPTIELAKHIKQLHTEDTVMECKHCEFKTTIRASMTQHMLRHKNATTIHCEYPGCRFKSFYEDAMVKHKKKHVDQGVKLQCSRCPFQTMNKYILRYHEEAHVTGKKRYTCDQCDYATILPANLVQHKYKHSTEKRFKCEYCPFASKYNTSLRFHVKKKHCDLPSFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871612;
- 90% Identity
- iTF_00871612;
- 80% Identity
- -