Ebil031631.1
Basic Information
- Insect
- Epinotia bilunana
- Gene Symbol
- -
- Assembly
- GCA_947049265.1
- Location
- CAMRIQ010000430.1:945760-949579[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0055 0.44 12.2 5.9 1 23 171 194 171 194 0.97 2 17 0.00032 0.026 16.1 0.8 1 23 203 226 203 226 0.96 3 17 0.025 2 10.1 0.7 2 23 239 261 239 261 0.97 4 17 0.00076 0.062 14.9 0.9 1 23 270 293 270 293 0.97 5 17 0.00022 0.018 16.6 1.4 1 23 305 328 305 328 0.96 6 17 4.6e-05 0.0037 18.7 0.7 2 23 357 379 356 379 0.96 7 17 0.0026 0.21 13.2 0.9 2 23 389 411 388 411 0.96 8 17 0.086 7 8.4 1.5 3 19 417 433 416 436 0.93 9 17 0.00024 0.019 16.5 0.5 2 21 441 460 440 463 0.95 10 17 0.039 3.2 9.5 1.4 3 23 473 494 472 494 0.95 11 17 0.057 4.6 9.0 3.0 1 23 499 522 499 522 0.94 12 17 0.0016 0.13 13.9 0.9 2 23 534 556 533 556 0.96 13 17 0.00015 0.013 17.1 1.9 1 23 579 602 579 603 0.94 14 17 0.83 67 5.3 0.1 2 23 609 630 608 630 0.91 15 17 0.077 6.3 8.6 3.2 2 23 637 658 636 658 0.97 16 17 0.034 2.8 9.7 0.2 1 23 724 746 724 746 0.97 17 17 0.28 23 6.8 2.8 1 23 752 775 752 775 0.96
Sequence Information
- Coding Sequence
- atgaTGTCAATAAAGCAAGAAAAGATAGAATATGATGATGTTAAACCGGACTTGGCAGCCCTTAAAATCAAGATTAAGATTGAAAAAGAAGAGAGAAAAGATCCAACGTCTTATCTTCCTGAAGAGCCCATGACCTATGAgttaaaaaagaagaaaaagaaaaaaaagaagcaCAGGCAAGAGGATCCGTTTAAAGACATACAAGAGAAAACACCAGTCGACATCATAAAAGATTTTGATTCTATGGTTGAATTTGCACCATGCCTCGATCCAGAGGTCAATATAAAAGTTGAAAACATTGAAGTTGAATTGGATTTCAATGATtttGCGGAAAATGGTGATCTTATGGTCGAAGGACCTCACAGCGAGGATAGTCAAGAACCAGAAGTTAAAATCGAACCGCAAAATCATGAAGCTGTCATTCTCACGTTTGAAAGTATCATCAATGAGAAGAACGATAAGACAGTTTTAGGTTACAGTCAGGAGACAGGTCTCAAAGCTGCACCTAACCATGTTTGCAAGATATGCCATCTAATATTTCAGACTCAAAGAACTTTACGTATGCACCAGAAAAGAAAGCATCAAGCGTTCAGGAAGGCTTTTAAACACATATGTGATTACTGTGGCATGTCATATGAGATGAAGAATAGCTTGGCTGCTCACATTAAAAGGAAACACGGCCCTAACTCGTCTCCAGACGATAAAGAGGAGCGAACGTGCGAAATTTGTGCTCTAGTGTTCAAAGGAATGACGAGGTTAAGAATGCACATGAGGAGAAAACATGATCTCTTTGAAGACTCCTTCCAACATGAGTGCGAGGAGTGTGGGTTAACCTATGACAAATATAGGAGCCTGATTGTccatatacaaagaaaacacTCAAAGGTTGCCAAACCAGTACAAACGCAATGGTTCAACTGTCCGTTTTGCCCTAAAATCTTCACCAAACGAGAAACGTACGCAAGACACGTGCAAAGAAAGCATAGAATCAACGAAGATGGCACGGAACAAAGTGATATAACGCCGGAAATTCTAGAAGGTTGCATTAACAAGGAAACTGGGGAGATATCTTGTAACGAATGCCCGCAGGTATTCTCGTCTTTAAATTTCTTAAAACTGCACATGAGGCGGAAACATAACGCGTTGAAAGAGGACTTTAgattgaaatgtatgatttGTAATTTGTCTTATGACAAGATTGAGAGTCTAAAACGGCACGTGAGAAGGAAACACGATGGCGGTGCTCATTGTGAAGTATGTAATAAGCAATTTGATACGAGAGAACAGTATTTAAGTCATTCCCATGTAAAAGTCATAAAGGAATGCCCAATTTGTGGCTTAATCTTCTCTTCACAAGGTGGTTTAGGGAAGCATATGAGGTGCACACATAAAATCGATACACCAAAAACTgtgttttgtaatatttgtaatgaaGGCTTCCACGATAAGCGGCAATTGAAACCGCATTTATTGAAAGTGCATTTAAAGGTGTCATACACTTGTAGGTTTTGCATGAAGGTATTCAAAGCGAAGGAAAGTTACAGACGCCACATTTTGTTCAAACATCCAGTGCCAAGTCATCGTAACAGTGAGCTGCAGAAGTGTGAACAATGTTCAGAGACTTTTCCAGACGAATTTGAACTCAGTCGTCATGTTCACACGGTCCATTCTAAAAAAGTTGATTTAGAAAACAGTTTTTTTGACATCAAGAAGGAAGAAGATGTAAAAGACTTGTTTCAATGCACGAAGTGCCCGGAAAACTACTCAACGTGGGATCAGCTTAGGCTACATTATGAGCAAAACCACCATACAGTTCAGGACACACAGTGTCAAATATGCGGCCAAATCCTGCCTACAACGGAACTTGCCAAACATATAAAGCAGGAACACACAGTTGACACAGTCCTTCAGTGTAAACATTGCGAATTTAAAACCACCATCAAAGCTAGCATGACACAGCATATGCTCAGACATAAAAACGCTACTACTATACATTGTGAATATCCCGGTTGTAAATTCAAGTCATTTTACGAAGATGcaatggttaaacataagaaaaaACATGTAGATCAGGGTGTGAAGTTACAATGTAGTAGATGTCCGTTTCAAACTATGAATAAGTACATTTTGAGGTACCACGAAGAAGCACACGTTACTGGGAAAAAAAGATATAATTGTGACCAATGCGACTATGCTACAATACTACCTGCTAACTTGGTGCAACATAAATATAAGCATTCGACAGAAAAGAGGTTCCGATGCGAATATTGTCCGTTCGCTACTAAATATAATACATCGTTACGTTTTCATGTTAAGAAAAAACACTGTGATCTCCCGTCTTTAATTTGA
- Protein Sequence
- MMSIKQEKIEYDDVKPDLAALKIKIKIEKEERKDPTSYLPEEPMTYELKKKKKKKKKHRQEDPFKDIQEKTPVDIIKDFDSMVEFAPCLDPEVNIKVENIEVELDFNDFAENGDLMVEGPHSEDSQEPEVKIEPQNHEAVILTFESIINEKNDKTVLGYSQETGLKAAPNHVCKICHLIFQTQRTLRMHQKRKHQAFRKAFKHICDYCGMSYEMKNSLAAHIKRKHGPNSSPDDKEERTCEICALVFKGMTRLRMHMRRKHDLFEDSFQHECEECGLTYDKYRSLIVHIQRKHSKVAKPVQTQWFNCPFCPKIFTKRETYARHVQRKHRINEDGTEQSDITPEILEGCINKETGEISCNECPQVFSSLNFLKLHMRRKHNALKEDFRLKCMICNLSYDKIESLKRHVRRKHDGGAHCEVCNKQFDTREQYLSHSHVKVIKECPICGLIFSSQGGLGKHMRCTHKIDTPKTVFCNICNEGFHDKRQLKPHLLKVHLKVSYTCRFCMKVFKAKESYRRHILFKHPVPSHRNSELQKCEQCSETFPDEFELSRHVHTVHSKKVDLENSFFDIKKEEDVKDLFQCTKCPENYSTWDQLRLHYEQNHHTVQDTQCQICGQILPTTELAKHIKQEHTVDTVLQCKHCEFKTTIKASMTQHMLRHKNATTIHCEYPGCKFKSFYEDAMVKHKKKHVDQGVKLQCSRCPFQTMNKYILRYHEEAHVTGKKRYNCDQCDYATILPANLVQHKYKHSTEKRFRCEYCPFATKYNTSLRFHVKKKHCDLPSLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871612;
- 90% Identity
- iTF_01072853;
- 80% Identity
- -