Lful025371.1
Basic Information
- Insect
- Lasius fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_949152495.1
- Location
- OX424451.1:3943665-3946556[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.8e-05 0.01 17.3 4.8 2 23 377 398 376 398 0.97 2 15 0.00014 0.022 16.3 1.3 2 23 405 427 404 427 0.95 3 15 4.3e-06 0.00066 21.1 0.9 2 23 522 543 521 543 0.97 4 15 1.9e-05 0.003 19.0 3.7 1 23 549 571 549 572 0.96 5 15 0.00012 0.018 16.6 1.2 1 23 577 599 577 599 0.97 6 15 1.2e-06 0.00019 22.8 1.4 1 23 623 645 623 645 0.98 7 15 1.4e-06 0.00022 22.6 1.2 1 23 651 673 651 673 0.97 8 15 1.1e-05 0.0017 19.8 2.4 1 23 679 701 679 701 0.98 9 15 0.0016 0.24 13.0 0.2 1 23 707 729 707 729 0.99 10 15 4.9e-05 0.0075 17.8 1.1 1 23 735 758 735 758 0.92 11 15 2.2e-05 0.0034 18.9 1.3 1 23 764 786 764 786 0.98 12 15 0.00049 0.075 14.6 4.7 1 23 792 814 792 814 0.98 13 15 6.2e-06 0.00095 20.6 0.4 1 23 820 843 820 843 0.97 14 15 0.0001 0.016 16.8 0.8 1 23 849 871 849 871 0.95 15 15 1.1e-06 0.00016 23.0 4.8 1 23 877 899 877 899 0.99
Sequence Information
- Coding Sequence
- ATGACAAAAATAAGAATGACTAAAGAAATGCCGTTAAGTGTAGAATGGATGCCACAAAATGCATATGTGCGCAATTCTTTGGATCATTTACTGCCAGGTGAACGAAATCAGAGTGGTTTTGTATTTGTAAAACAGGAAACGGAATTCTTTGAAAGTGCATTGAATTCACAATCTGTACAAAACACAGTTTTGCATTTGCAAGTTTCATCTAAAGAAAAGGATAAGAAGATAAAGCAAGAAAGCAGCCATTTGGATGTATTGCCTTGTCAAGCAGGATCTCTAAATCGGTCGcccaaaaaattgattgatggttccgagaaattatataatagaggTCGCATTGACATAATAGAAATGACAGTAGAACCGACATTCcgctttaaatatttttttgtttacgaAAATCAGCCATCCAAATTTGTTGTACTAAGAGCTCTCTGCAATAATACGGCCAAAGAAGTTGCGAGGAATTTGTTAGATGTATTGGCGATCATAGGGGCACCACGAGTGCTACAGAGTGGTAATGGACGTAAGTTTGCTGAACAAGTTGTACATGAGTTACGTTCGCTACGGAACGATTCCCTCATATTGCACGGGGATGTACCTAAGTGTGAAGTTAGCTGCAGGGATTTTAAGAGCTTGCTCGAATCCTGGATGAGAAAAAATCCTACTAGGACCTGGTACGAAGGACTGAACTTCGTACAAATTCTTCACAACTCGACACACCGCTGTCAGAATGGTAAAATTCCATGCAACGTATTATTCGGACGAGATGTACGCGAGAACTTTCAAAGTCTCGGTATAGAAAAAGATACAGAGAACCTATGGACAGAGGAAGAATGGATCGAACATTTGTCACatagagaaaataaagatatagtTACAATGACGAAAGATACACAGAGGACATCGGATAGTTATATTACCAATTATTGTGAAGAAAACGACAATGTACAAGACGCACGCAGTCAAAAGGCATTTTCGAGAAACGACGACATAAATGGCTTTAGTTTTGTCAATGTGAAGAATGAATCTTTCACGAGCAACTTGCGCGTAACAGATTCAACGACTAGAGGTGAAATAGAAATAGGAAAAAACGAACTAAAAACCGAGAATACACAATTCCTCAAGTGCAAGTACTGCCAAAAGCAATACATGAAGCTGGGACATTTGAAGAACCACATGAGAACTCACAAAGCGCAACGGGTTCTCCGATGCAAACTGTGTAGTAAAACATTCAGCGTTCCAAGATTATACGCGAAGCACATGAAGCAGTCGCATGGGCAGGATAAATTAGCTGACAAGGAAGAGGAGATCCCGGTTAGTAGAAATACCAGAAGCAATGCCGCTGACGCGGTAACGACTGCATCCAATGTGGAAAAATCCGAGATTCGAACGGCACATAACGAATTATCCGATCCCGAGACAACGAACGAAGATTGCGACGCGTCGTTGGACGATACGAAAAATTCCTATAGTAAGACTGCCAAGATCTTGGGTCATATCGGTAGACGAAAGTCGTCCGCGGAGAGTCGGAGCGTGTCGAAGATACAATCCACCTTACAATGTACATATTGCGAGCAAAAGTTCAGCTTTCCCAGCGTGCTGGAGAGGCACATGCGATCGCATACGAACGAACGGCCGTACGTATGCGACGTGTGCAACAAGAGTTTTAAGCAGTTGGGTCACCTTAGCCAACACTCGTTGACGCATCACGATTACCGTTCGTTCCAATGCACGGTGTGCGGCGTAAAGTTCGATTCGTTGGACTCGTTGAAGCAGCACGCGCATTCGCACAAAGGTGACGCgacaacaacgacgacgacgatgacgacaacGTCCAAGATCCGCGACGTCTATCGTCTGTTCGAATGCGACAACTGCAAGAAGGTATTCACGACGAAGAGCGTGCTGGAGCGGCATATATTCACGCACACGCAGGAGCGTCAGTATGACTGCAAGGTGTGCGGCAAACGTTTCAAGCAGGCCGGTCACGTCAAATCGCACATGCTGGTCCATACGGGCGAGCGCCGCTTCCAGTGCACCGTGTGTTCCAAGCGCTTCAGCTTGTCGAACTCATTGAAGAAGCACATGTACGTGCACAATGGCGAGAAGCCGTATCAGTGCGACGTATGCGGCGCGCGTTTCCTGGAGAAGCGCAATCTCAATGGTCATCTGCTGACGCACACCAACGAGCGTCCGTATTGCTGCAAGATCTGCGGCAAACGATACACTCTGGCTGACACTCTGCGCCGTCACGTGAGCGCCGCGCACGAGGACGGTCGTACCTATCAGTGCGAGATCTGCGCCAAGATGTTCAAGCAGCTGGCGCATCTGTCGGTGCATAAGAAGGTGCACAACGACGAACGGCCGTTCCAGTGTCACTTGTGCGAGAAGAACTTCAAGCACAAGAATGTGCTCAAGTCGCATCTGGCGATCCACGCGAACGTACGGCCGTTCGAGTGCGATGTTTGCAAGGCCACATTCGTCAGGAAAACGAATCTGCAGACACACATCTCGTCCGCGCACATGAATGAACGCCCGTACGCCTGCACCATTTGCAGCAAGCGCTTCAAGCAGATCAGCCATCTGAACGGCCACGTGGTCGTGCACAGCAATCTGATGCCCTACAAGTGCGACTACTGCGATCGTCGGTGCAATCGACTGGACAACCTGAAGAAACACATGCGTCTTCATACAAAGAACAAGGAGTGA
- Protein Sequence
- MTKIRMTKEMPLSVEWMPQNAYVRNSLDHLLPGERNQSGFVFVKQETEFFESALNSQSVQNTVLHLQVSSKEKDKKIKQESSHLDVLPCQAGSLNRSPKKLIDGSEKLYNRGRIDIIEMTVEPTFRFKYFFVYENQPSKFVVLRALCNNTAKEVARNLLDVLAIIGAPRVLQSGNGRKFAEQVVHELRSLRNDSLILHGDVPKCEVSCRDFKSLLESWMRKNPTRTWYEGLNFVQILHNSTHRCQNGKIPCNVLFGRDVRENFQSLGIEKDTENLWTEEEWIEHLSHRENKDIVTMTKDTQRTSDSYITNYCEENDNVQDARSQKAFSRNDDINGFSFVNVKNESFTSNLRVTDSTTRGEIEIGKNELKTENTQFLKCKYCQKQYMKLGHLKNHMRTHKAQRVLRCKLCSKTFSVPRLYAKHMKQSHGQDKLADKEEEIPVSRNTRSNAADAVTTASNVEKSEIRTAHNELSDPETTNEDCDASLDDTKNSYSKTAKILGHIGRRKSSAESRSVSKIQSTLQCTYCEQKFSFPSVLERHMRSHTNERPYVCDVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDSLKQHAHSHKGDATTTTTTMTTTSKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYACTICSKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00868269; iTF_00869052; iTF_01077653; iTF_00109980; iTF_01254976; iTF_00265174; iTF_00264460; iTF_01245370; iTF_00729506; iTF_00729505; iTF_00280102; iTF_00730224;
- 90% Identity
- iTF_00868269;
- 80% Identity
- -