Fexs008384.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Formica exsecta
Gene Symbol
-
Assembly
GCA_003651465.1
Location
NW:715770-719776[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4.3e-05 0.0029 17.3 4.8 2 23 371 392 370 392 0.97
2 15 9e-05 0.0061 16.3 1.3 2 23 399 421 398 421 0.95
3 15 2.7e-06 0.00018 21.1 0.9 2 23 516 537 515 537 0.97
4 15 1.2e-05 0.00082 19.1 3.7 1 23 543 565 543 566 0.96
5 15 0.00012 0.0083 15.9 1.0 1 23 571 593 571 593 0.96
6 15 7.6e-07 5.1e-05 22.8 1.4 1 23 614 636 614 636 0.98
7 15 9.8e-07 6.6e-05 22.5 0.9 1 23 642 664 642 664 0.97
8 15 7e-06 0.00047 19.8 2.4 1 23 670 692 670 692 0.98
9 15 0.00099 0.067 13.0 0.2 1 23 698 720 698 720 0.99
10 15 3.1e-05 0.0021 17.8 1.1 1 23 726 749 726 749 0.92
11 15 1.4e-05 0.00094 18.9 1.3 1 23 755 777 755 777 0.98
12 15 0.00031 0.021 14.7 4.7 1 23 783 805 783 805 0.98
13 15 3.9e-06 0.00026 20.6 0.4 1 23 811 834 811 834 0.97
14 15 6.8e-06 0.00046 19.9 0.5 1 23 840 862 840 862 0.95
15 15 6.7e-07 4.5e-05 23.0 4.8 1 23 868 890 868 890 0.99

Sequence Information

Coding Sequence
ATGacaaaaataagaatgaaTAAAGAAATGCCGTTAAGTGTAGAATGGATGCCACAAAATGCATATGTGCGAAATTCTTTGGATCATTTGCTGCCAGGTGAACGAAATCAACGTAGTTTTGTATTTGTAAAACAGGAAGCAGAATTCTTTGAAAGCACATTGAACTCACAATCTGTCCAAAATACAGTTGTGCATTTGCAAGTTTCatctaaagagaaggaagttaAACAAGAAAACAGCCATTTATTGTCTTGTCAAGCAGGCTCATTAAATCAGTCGCCCAAAAAATTGACTGAGGGTTCTGATAGATTGTATAATAGAGGTCGCAttgatataatagaaatgaCAGTAGAACCAACATTTcgctataaatatttctttgtttatgAAAATCAGCCATCCAAGTTTGTTGTACTAAGAGCTCTTTGCAACAATACGGCTGAAGAAGTTGCAAAGAATTTGTTAGATGTATTGGCGATCATAGGGGCACCACAAGTGTTACAGAGTGGTAATGGACGTAAGTTTGCTGAACAAGTTGTACATGAGTTACGTTCACTGTGGAACGATTCCCTCATATTGCATGGGGATGTACCTAAATGTGAAGTTAGCTGCAGGGATTTTAAGAGCTTGCTCGAATCCTGGATGAGAAAGAATCCTACCAAAACCTGGTGTGAAGGACTGAACTTCATACAGATTCTTCACAATTCAACATACCACAGTCAGAATAGTAAAGTTCCATGCGACATATTATTTGGACGAGACGTACGCGAAAACTTTCAAAACTTCGGTATAGAAAAAGATACGGAAAGTCTATGGACAGAGGAAGAATGGATCGAACACTTGTCAcatagagaaaataaagatataattgcaACAACAAAAGACACGCAGAAGACATCGAATAGTACCAATTATTGTGAAGAAAATGATGACGTACAAGATACATGCAGTCAAAAGGCATTTTCGAGAAACAACGACGTAAATGGCTTTAGTTTTGTCAATATAAAGAATGAATCTCTCACGAGCAATATGCGCGCAACAAATTCAACGAATAAAGGTGAAATAGAAGTAGGAAAAAATGAACTGAAAAACGAGAATATGCAATTTCTCAAGTGCAAATACTGCCAAAAGCAATACATGAAACTGGGACATTTAAAGAATCACATGAGAACTCATAAAACGCAACGGGCTCTCCGATGTAAGCTGTGCAGTAAAACATTCAGTGTTCCAAGATTATATGCGAAGCACATGAAACAGTCGCATGGGCAAGGTAAATTAGCTGACGAGGAAGAGGAGGTACCAGTTAGAAGAAGTACCAGAAGCAATGCCGCTGACGCGGTAACGACTGTATCCAATAAGGAAAGATCCGAGATTCGAGCGGCACATAACGAATTATCCGATGCCGAGACAACAAATGAAAATTGCGACGCATTGCTGgacaatacaaaaaattctaatagcAAGACTGCCAAGATCTCGAGTCATACCGGTAGACGAAAATTGTCTGCGGAGAGTCGGGGCGTGTCGAAAACACAATCCACCTTACAGTGTACATATTGCGAGCAAAAGTTTAGCTTTCCTAGCGTGCTGGAGAGGCACATGCGGTCGCACACAAACGAACGGCCATATGTATGCGACGTGTGCAACAAGAGTTTCAAGCAGCTGGGTCATCTTAGCCAGCACTCGCTGACGCATCACGATTACCGCTCGTTTCAGTGCACTGTGTGCGGCGTAAAATTCGACTCGCTAGACTCGCTGAAGCAACACGCGCATTTGCATAAAGGTAACGCGacaacaacgacgacgacgacgtctaAGATCCGCGACGTCTATCGTCTGTTTGAATGCGACAACTGCAAGAAGGTGTTCACGACGAAGAGCGTGCTGGAGCGGCATATATTCACGCATACGCAGGAGCGCCAGTACGACTGCAAGATATGCGGCAAACGTTTCAAGCAAGCCGGCCATGTAAAATCACACATACTAGTCCATACGGGCGAGCGCCGCTTCCAGTGCACCGTGTGCTCGAAGCGCTTCAGCTTGTCAAACTCGTTGAAGAAGCACATGTACGTACATAACGGTGAGAAGCCGTATCAATGCGACGTATGCGGCGCGCGTTTCCTGGAGAAGCGCAATCTCAATGGTCATCTGCTGACGCATACCAACGAGCGTCCGTATTGCTGCAAGATTTGCGGCAAACGGTATACTCTGGCAGACACTCTGCGCCGTCACGTGAGCGCCGCGCATGAAGACGGTCGTACTTATCAGTGCGAGATCTGCGCCAAGATGTTCAAGCAGCTAGCGCATCTGTCGGTGCACAAGAAGGTGCACAACGATGAACGGCCGTTCCAGTGTCATTTGTGCGAGAAGAATTTCAAGCACAAGAACGTGCTCAAGTCGCATCTAGCGATCCATGCGAATGTAAGGCCGTTCGAATGCGATGTATGCAAGGCCACGTTCGTCAGGAAAACGAATCTGCAGACGCACATCTCATCCGCGCACATGAACGAGCGCCCATATGCCTGCACCATTTGTGGCAAGCGTTTCAAGCAAATCAGTCATCTGAACGGCCACGTAGTCGTGCACAGCAATCTGATGCCTTATAAGTGCGACTACTGCGACCGTCGATGTAATCGACTGGACAACCTGAAGAAACACATGCGTCTCCATACAAAAAACAAGGAATGA
Protein Sequence
MTKIRMNKEMPLSVEWMPQNAYVRNSLDHLLPGERNQRSFVFVKQEAEFFESTLNSQSVQNTVVHLQVSSKEKEVKQENSHLLSCQAGSLNQSPKKLTEGSDRLYNRGRIDIIEMTVEPTFRYKYFFVYENQPSKFVVLRALCNNTAEEVAKNLLDVLAIIGAPQVLQSGNGRKFAEQVVHELRSLWNDSLILHGDVPKCEVSCRDFKSLLESWMRKNPTKTWCEGLNFIQILHNSTYHSQNSKVPCDILFGRDVRENFQNFGIEKDTESLWTEEEWIEHLSHRENKDIIATTKDTQKTSNSTNYCEENDDVQDTCSQKAFSRNNDVNGFSFVNIKNESLTSNMRATNSTNKGEIEVGKNELKNENMQFLKCKYCQKQYMKLGHLKNHMRTHKTQRALRCKLCSKTFSVPRLYAKHMKQSHGQGKLADEEEEVPVRRSTRSNAADAVTTVSNKERSEIRAAHNELSDAETTNENCDALLDNTKNSNSKTAKISSHTGRRKLSAESRGVSKTQSTLQCTYCEQKFSFPSVLERHMRSHTNERPYVCDVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDSLKQHAHLHKGNATTTTTTTSKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKICGKRFKQAGHVKSHILVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYACTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00867616;
90% Identity
iTF_00868269;
80% Identity
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