Lpla031562.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasius platythorax
Gene Symbol
-
Assembly
GCA_963971435.1
Location
OZ020543.1:14234094-14237021[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.1e-05 0.014 17.3 4.8 2 23 375 396 374 396 0.97
2 15 0.00015 0.03 16.3 1.3 2 23 403 425 402 425 0.95
3 15 9.4e-06 0.0019 20.1 0.7 2 23 520 541 519 541 0.97
4 15 2e-05 0.004 19.0 3.7 1 23 547 569 547 570 0.96
5 15 0.00012 0.024 16.6 1.2 1 23 575 597 575 597 0.97
6 15 1.3e-06 0.00025 22.8 1.4 1 23 621 643 621 643 0.98
7 15 1.5e-06 0.00029 22.6 1.2 1 23 649 671 649 671 0.97
8 15 1.2e-05 0.0023 19.8 2.4 1 23 677 699 677 699 0.98
9 15 0.0016 0.33 13.0 0.2 1 23 705 727 705 727 0.99
10 15 5e-05 0.01 17.8 1.1 1 23 733 756 733 756 0.92
11 15 2.3e-05 0.0046 18.9 1.3 1 23 762 784 762 784 0.98
12 15 0.0005 0.1 14.6 4.7 1 23 790 812 790 812 0.98
13 15 6.4e-06 0.0013 20.6 0.4 1 23 818 841 818 841 0.97
14 15 0.00011 0.021 16.8 0.8 1 23 847 869 847 869 0.95
15 15 1.1e-06 0.00022 23.0 4.8 1 23 875 897 875 897 0.99

Sequence Information

Coding Sequence
ATGACAAAAATAAGAATGACTAAAGAAATGCCGTTAAGTGTAGAATGGATGCCACAAAATGCATATGTGCGCAATTCTTTGGATCATTTACTGCCAGGTGAACGAAATCAGCGTGGTTTTGTATTTGTAAAACAGGAAACGGAATTCTTTGAAAGTGCATTGAATTCACAACCTGTACAAAACACAGTTGTGCATTTGCAAGTTTCATCTAAAGAGAAGGATAAGAAGATAAAGCAAGAAAGCAGCCATTTGGATATATTGCCTTGTCAAGCAGGATCTCTAAATCGGTCACCCAAAAAATTGACTGATGGTTCtgagagattatataatagaggTCGCATTGACATAATAGAAATGACAGTAGAACCGACATTccactttaaatatttttttgtttacgaaAATCAGCCATCCAAATTTGTTGTATTAAGAGCTCTCTGCAATAATACGGCCAAAGAAGTTGCGAGGAATTTGTTAGATGTATTGGCAATCATAGGGGCACCACGAGTGCTACAGAGTGGTAATGGACGTAAGTTTGCTGAACAAGTTGTACATGAGTTACGTTCGCTATGGAACGATTCCCTCATATTGCACGGGGATGTACCTAAGTGTGAAGTTAGCTGCAGGGATTTTAAGAGCTTGCTCGAATCCTGGATGAGAAAAAATCCTACTAGGACCTGGTGCGAAGGACTGAACTTCATACAAATTCTTCACAACTCGACACACCGCTGTCAGAATGGTAAAATTCCATGCGACGTATTATTCGGACGAGATGTACGCGAGAACTTTCAAAGTCTCGGTATAGAAAAAGATACAGAGAACCTATGGACAGAGGAAGAATGGATCGAACATTTGTCAcatagagaaaataaagatatagtTACAATGACGAAAGATACACAGAGGACATCGGATAGTACCAATTATTGTGAAGAAAACGACAATGTACAAGACGCACGCAGTCAAAAGGCATTTTCGAGAAACGACGACATAAATGGCTTTAGTTTTGTCAATGTGAAGAATGAATCTTTCACGAGCAACTTGCGCGCAACAGATTCAACGACTAGAGGTGAAATAGAAATAGGAAAAAACGAACTAAAAACCGAGAATACACAATTCCTCAAGTGCAAGTACTGCCAAAAGCAATACATGAAGCTGGGACATTTGAAGAACCACATGAGAACTCACAAAGCGCAACGGGTTCTCCGATGCAAACTGTGCAGTAAAACATTCAGCGTTCCAAGATTATACGCGAAGCACATGAAGCAGTCGCATGGGCAGGATAAATTAGCTGACAAGGAAGAAGAGATCCCGGTTAGTAGAAATACCAGAAGCAATGCCGCTGACGCGGTAACGACTGCATCCAATGTGGAAAGATCCGAGATTCGAACGGCACATAACGAATTATCCGATCCCGAGACAACGAACGAAGATTGCGACGCGTCGTTGGACGATACGAAAAATTCCTATAGCAAGACTGCCAAGATCTCGGGTCATATCGGTAGACGAAAGTCGTCCGCGGAGAGTCGAAACGTGTCGAAGATACAATCCACCTTACAGTGTACATATTGCGAGCAAAAGTTCAGCTTTCCCAGCGTGCTGGAGAGGCACATACGATCGCATACGAACGAACGGCCGTACGTATGCGACGTGTGCAACAAGAGTTTCAAGCAGTTGGGTCACCTTAGCCAACACTCGCTGACGCATCACGATTATCGTTCGTTCCAATGCACGGTGTGCGGCGTAAAATTCGACTCGTTGGACTCGTTGAAGCAGCACGCGCATTCGCACAAAGGTGATGCGACatcaacgacgacgacgatgacgacaacGTCCAAGATCCGCGATGTCTATCGTCTGTTCGAATGCGACAACTGCAAGAAGGTATTCACGACGAAGAGCGTGCTGGAGCGGCATATATTCACGCACACGCAGGAGCGTCAGTATGACTGCAAGGTGTGCGGCAAACGTTTCAAGCAGGCCGGTCACGTCAAATCGCACATGCTGGTCCATACGGGCGAGCGCCGCTTCCAATGCACCGTGTGTTCCAAGCGCTTCAGCTTGTCGAACTCATTGAAGAAGCACATGTACGTGCACAATGGCGAGAAGCCGTATCAGTGCGACGTATGCGGCGCGCGTTTCCTGGAGAAGCGCAATCTCAATGGTCATCTGCTGACGCACACCAACGAGCGTCCGTATTGCTGCAAGATCTGCGGCAAACGGTACACTCTGGCTGACACTCTGCGCCGTCACGTGAGCGCCGCGCACGAGGACGGTCGTACCTATCAGTGCGAGATCTGCGCCAAGATGTTCAAGCAGCTGGCGCATCTGTCGGTGCATAAGAAGGTGCACAACGACGAACGGCCGTTCCAGTGTCACTTGTGCGAGAAGAACTTCAAGCACAAGAATGTGCTCAAGTCGCATCTGGCGATCCACGCGAACGTACGGCCGTTCGAGTGCGATGTTTGCAAGGCCACATTCGTCAGGAAAACGAATCTGCAGACGCACATCTCGTCCGCGCACATGAATGAACGCCCGTACGCCTGCACCATTTGCAGCAAGCGCTTCAAGCAGATCAGCCATCTGAACGGCCACGTGGTCGTGCACAGCAATCTGATGCCCTACAAGTGCGACTACTGCGACCGTCGTTGCAATCGATTGGACAACCTGAAGAAACACATGCGTCTCCATACAAAGAACAAGGAGTGA
Protein Sequence
MTKIRMTKEMPLSVEWMPQNAYVRNSLDHLLPGERNQRGFVFVKQETEFFESALNSQPVQNTVVHLQVSSKEKDKKIKQESSHLDILPCQAGSLNRSPKKLTDGSERLYNRGRIDIIEMTVEPTFHFKYFFVYENQPSKFVVLRALCNNTAKEVARNLLDVLAIIGAPRVLQSGNGRKFAEQVVHELRSLWNDSLILHGDVPKCEVSCRDFKSLLESWMRKNPTRTWCEGLNFIQILHNSTHRCQNGKIPCDVLFGRDVRENFQSLGIEKDTENLWTEEEWIEHLSHRENKDIVTMTKDTQRTSDSTNYCEENDNVQDARSQKAFSRNDDINGFSFVNVKNESFTSNLRATDSTTRGEIEIGKNELKTENTQFLKCKYCQKQYMKLGHLKNHMRTHKAQRVLRCKLCSKTFSVPRLYAKHMKQSHGQDKLADKEEEIPVSRNTRSNAADAVTTASNVERSEIRTAHNELSDPETTNEDCDASLDDTKNSYSKTAKISGHIGRRKSSAESRNVSKIQSTLQCTYCEQKFSFPSVLERHIRSHTNERPYVCDVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDSLKQHAHSHKGDATSTTTTMTTTSKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYACTICSKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00867616;
90% Identity
iTF_00868269;
80% Identity
-