Pimp029205.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- Snai1
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000011.1:9928632-9931488[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.6e-05 0.013 17.3 4.8 2 23 376 397 375 397 0.97 2 15 9.9e-05 0.019 16.8 1.1 2 23 404 426 403 426 0.95 3 15 4.2e-06 0.00083 21.1 0.9 2 23 511 532 510 532 0.97 4 15 1.9e-05 0.0037 19.1 3.7 1 23 538 560 538 561 0.96 5 15 0.00015 0.029 16.3 1.3 1 23 566 588 566 588 0.96 6 15 1.2e-06 0.00023 22.8 1.4 1 23 613 635 613 635 0.98 7 15 1.4e-06 0.00027 22.6 1.2 1 23 641 663 641 663 0.97 8 15 6.1e-06 0.0012 20.6 2.4 1 23 669 691 669 691 0.98 9 15 0.0015 0.3 13.0 0.2 1 23 697 719 697 719 0.99 10 15 4.8e-05 0.0093 17.8 1.1 1 23 725 748 725 748 0.92 11 15 2.2e-05 0.0042 18.9 1.3 1 23 754 776 754 776 0.98 12 15 0.00047 0.093 14.7 4.7 1 23 782 804 782 804 0.98 13 15 6e-06 0.0012 20.6 0.4 1 23 810 833 810 833 0.97 14 15 4.7e-06 0.00093 21.0 0.6 1 23 839 861 839 861 0.96 15 15 1e-06 0.0002 23.0 4.8 1 23 867 889 867 889 0.99
Sequence Information
- Coding Sequence
- ATGACAAAAATAAGAATGAATAAAGAAATGCCGTTAAGTGTAGAATGGATGCCACAAAATGCATATGTGCGCAATTCTTTGGATCATTTGCTGCCAGGTGAACGAAATCAGCGTAATTTTGTATTTGTAAAACAGGAAACGGAATTCTTTGAAAGTGCATTAAATTCACAATCTGTACAAAACACAGTTGTGCACTTGCAAGTTTCATCCAAAGAGAAGGATAAAGAGATCAAGCAAGAAAGCAgtcatttgaatattttaCCTGGTGAAGCAGGATCTTTAAATCAATCTCCCAAAAAATTGACCAATGGTTCTGAGAGATTATATAACAGAGGTCGAATTGACATAATAGAAATAACAGTAGAACCgacattttgttataaatatttgtttgtttATGAAAATCAACCATCCAAGTTTGTTGTATTAAGAGCTCTCTGCGATAACACGGCCAAAGAAGTTGCTAAGAATTTGTTAGATGTATTAGCGATCATAGGGGCACCACGAGTGCTACAGAGTGGTAATGGACGTAAGTTTGCTGAACAAGTTGTACATGAGCTACGTTTATTATGGAACGATTTCCTCATATTGCACGGGGATGTACCTAAGTGTGAAGTTAGCTGCAGGGATTTTAAGAGCTTGCTCGAATCCTGGATGAGAAAAAATCCTACTAGGACCTGGTGCGAAGGACTGAACTTTATACAAATTCTTCACAACTCGACATACCGCTGTCAGAATGGTAAAGTTCCATGCGACATATTATTTGGACGAGATGTACGCGAAAACTTTCAAAGCCTCGGTATGGAAAAAGATACAGAGAGCCTGTGGACAGAGGAAGAATGGATCAAACATTTGTCACATagggaaaataaaaatataattacaacgACGAAAGATACGCAGAAGACATCGGATagtattaatCATTGTGAAGAAAACGACAATGTACAAGATAGATGCAGTCAAAAGGCATCTTCGAGAAGCGACAACATAAATGGCTTTAGTTTTGTCAATGTAAAGAATGAATCTTTCACGAGCAACGTACGTGCAACGGATTTAATAACGACTAGAGATGAAATAGAAATAGGAAAAAACGAACTGAAAACCGAGAGTATGCAATTTCTCAAGTGCAAGTACTGCCAGAAGCAATACATGAAGCTGGGACATTTGAAGAACCACATGAGAACTCACAAAACGCCACGAGTTCTCCAATGCAAATTGTGCAGTAAAACATTCAGCGTTCCAAGATTATACGCGAAGCACATGAAGCAGTCGCACGGGCAAGATAAATTAGCTGACGAAGAGGAGGAGATACCGGTTAGTAGAAATACCAGAAGCAACGACGCAGCGAAGACTGTATCCAATGAGCATAACGAATTATCTGATCCCGAGACGATGAACGAAAATTGCGACGCGTCGCTGGACGACACGAAAACTTCCTGCAGCAAGACTGTCAAGACCTCGAGTCACCTCGGTAGACAAAAGTCGTCCGCGGAGAGTCGGAACGTGTCGAAGACACAATCCACTTTACAGTGTACATATTGCGAGCAAAAGTTCAGCTTTCCCAGCGTGCTGGAGAGGCACATGCGATCGCACACAAACGAACGTCCATATGTGTGCGACGTTTGCAACAAGAGCTTCAAGCAGCTTGGTCATCTCAGCCAGCACTCGCTGACGCATCACGATTATCGCTCGTTCCAGTGCACGATGTGCGGGATAAAGTTCGACTCGTTGGACTCGCTGAAGCAGCACGCGCATTTACACAAGGGTGACACGACAaccacgacgacgacgacgacatcGTCAACGTCCAAGATCCGCGACGTCTATCGTCTGTTCGAGTGCGACAACTGCAAGAAGGTGTTCACCACGAAGAGCGTGCTGGAGCGGCATATATTCACGCACACGCAGGAGCGGCAGTACGACTGCAAGGTCTGCGGGAAACGTTTCAAGCAGGCCGGCCACGTCAAGTCGCACATGTTGGTTCATACAGGCGAGCGCCGCTTCCAGTGCACTATATGTTCGAAGCGCTTCAGCCTGTCGAACTCGTTGAAGAAGCACATGTACGTGCACAACGGCGAGAAGCCGTATCAGTGCGACGTATGCGGGGCGCGTTTCCTGGAGAAGCGCAATCTCAACGGTCATCTGCTGACGCACACCAACGAGCGTCCGTATTGCTGCAAGATCTGCGGGAAACGGTACACCTTGGCGGATACTCTGCGCCGTCACGTGAGCGCCGCGCACGAGGACGGTCGTACTTATCAGTGCGAGATCTGCGCCAAGATGTTCAAGCAGCTGGCGCATCTGTCGGTCCACAAGAAGGTGCACAACGACGAGCGGCCGTTCCAGTGTCACCTGTGCGAGAAGAACTTCAAGCACAAGAACGTGCTCAAGTCGCATCTGGCGATTCACGCGAACGTACGGCCGTTCGAGTGCGACGTCTGCAAGGCCACATTTGTCAGGAAGACGAATCTGCAAACCCACATCTCGTCCGCGCACATGAACGAACGCCCGTACGTCTGCACCATCTGCGGCAAGCGTTTCAAGCAGATCAGTCATCTCAACGGACACGTGGTCGTGCACAGCAATCTGATGCCCTACAAGTGCGACTACTGCGACCGCCGCTGCAATCGACTGGACAACCTCAAGAAACATATGCGTCTCCATACGAAGAACAAGGAGTGA
- Protein Sequence
- MTKIRMNKEMPLSVEWMPQNAYVRNSLDHLLPGERNQRNFVFVKQETEFFESALNSQSVQNTVVHLQVSSKEKDKEIKQESSHLNILPGEAGSLNQSPKKLTNGSERLYNRGRIDIIEITVEPTFCYKYLFVYENQPSKFVVLRALCDNTAKEVAKNLLDVLAIIGAPRVLQSGNGRKFAEQVVHELRLLWNDFLILHGDVPKCEVSCRDFKSLLESWMRKNPTRTWCEGLNFIQILHNSTYRCQNGKVPCDILFGRDVRENFQSLGMEKDTESLWTEEEWIKHLSHRENKNIITTTKDTQKTSDSINHCEENDNVQDRCSQKASSRSDNINGFSFVNVKNESFTSNVRATDLITTRDEIEIGKNELKTESMQFLKCKYCQKQYMKLGHLKNHMRTHKTPRVLQCKLCSKTFSVPRLYAKHMKQSHGQDKLADEEEEIPVSRNTRSNDAAKTVSNEHNELSDPETMNENCDASLDDTKTSCSKTVKTSSHLGRQKSSAESRNVSKTQSTLQCTYCEQKFSFPSVLERHMRSHTNERPYVCDVCNKSFKQLGHLSQHSLTHHDYRSFQCTMCGIKFDSLDSLKQHAHLHKGDTTTTTTTTTSSTSKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00867616;
- 90% Identity
- iTF_00868269;
- 80% Identity
- -