Pmex026979.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polyergus mexicanus
Gene Symbol
-
Assembly
GCA_030449975.1
Location
JAUDSZ010000016.1:1143029-1145873[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 6.8e-05 0.012 17.3 4.8 2 23 372 393 371 393 0.97
2 15 0.00014 0.025 16.3 1.3 2 23 400 422 399 422 0.95
3 15 3e-05 0.0052 18.5 0.6 2 23 517 538 516 538 0.97
4 15 1.9e-05 0.0034 19.1 3.7 1 23 544 566 544 567 0.96
5 15 0.00025 0.043 15.6 1.3 1 23 572 594 572 594 0.96
6 15 1.2e-06 0.00021 22.8 1.4 1 23 615 637 615 637 0.98
7 15 1.4e-06 0.00025 22.6 1.2 1 23 643 665 643 665 0.97
8 15 6.3e-06 0.0011 20.6 2.4 1 23 671 693 671 693 0.98
9 15 0.0016 0.27 13.0 0.2 1 23 699 721 699 721 0.99
10 15 4.9e-05 0.0085 17.8 1.1 1 23 727 750 727 750 0.92
11 15 2.2e-05 0.0039 18.9 1.3 1 23 756 778 756 778 0.98
12 15 0.00049 0.085 14.6 4.7 1 23 784 806 784 806 0.98
13 15 6.2e-06 0.0011 20.6 0.4 1 23 812 835 812 835 0.97
14 15 1.1e-05 0.0019 19.9 0.5 1 23 841 863 841 863 0.95
15 15 1.1e-06 0.00019 23.0 4.8 1 23 869 891 869 891 0.99

Sequence Information

Coding Sequence
ATGACAAAAATAAGAATGAATAAAGAAATGCCGTTAAGTGTAGAATGGATGCCACAAAATGCATACGTGCAAAATTCTTTGGATCATTTGCTGCCAGGTGAACGAAATCAACGTAGTTTTGTATTTGTAAAACAAGAAGCAGAATTCTTTGAAAGCACATTGAACTCACAATCTGTACAAAATACAGTTGTGCATTTGCAAGTTTCATCTAAAGAGAAGGATAAGGAAATTAAACAAGAAAGTAGCCATTTATTGTCTTGTCAAGCAGGCTCATTAAATCAATTGCCCAAAAAATTGACTGAGGGTTCTGATAGATTGTATAATAGAGGTCGCAttgatataatagaaatgacAGTAGAACCAACATTTcgctataaatatttctttgtttaTGAAAATCAGCCATCCAAGTTTGTTGTACTAAGAGCTCTCTGCAACAATACGGCTGAAGAAGTAGCAAAGAATTTGTTAGATGTATTGGCGATCATAGGGGCACCACAAGTGTTACAGAGTGGTAATGGACGTAAGTTTGCTGAACAAGTTGTACATGAGTTACGTTCAATGTGGAACGATTCCCTTATATTACATGGAGATATACCTAAATGTGAAGTTAGCTGTAGGGATTTTAAGAGCTTGCTCGAATCCTGGATGAGAAAGAATCCTACCAAAACCTGGTGTGAAGGACTGAACTTCATACAGATTCTTCACAATTCGACATACCACAGTCAGAACGGTAAAGTTCCATGCGACGTATTATTTGGACGAGATGTATGCGAAAACTTTCAAAACTTTGgtacagaaaaagatacagAAAGTCTATGGACAGAGGAAGAATGGATCGAACGTTTGTCAcgtagaaaaaataaagatataattgcaACAACAAAAGACACGCAGAAAATATCGAACAGTACCAATTATTGTGAAGAAAATGACAACGAAGATACATGCAGTCAAAAGGCATTTTCGAGAAACGACGATGTAAATGGCTTTAGTTTTGTCAATATAAAGAATGAATCTCTCACGAGCAATATGCACGTAACAAATTCAACGAGTATAAGTGAAATAGAAGTAGGAAAAAATGAATTGAAAAACGAGAATATGCAATTTCTCAAGTGCAAATACTGCCAAAAGCAATACATGAAACTGGGACATTTGAAGAATCACATGAGAACTCATAAAACGCAACGGGTTCTCCGATGTAAGCTGTGCAGTAAAACATTCAGTGTTCCAAGATTATATGCGAAGCACATGAAACAGTCGCATGGGCAAGGTAAATTAGCTGACGAGGAAGAGGAGATACCAGTTAGAAGAAGTACCAGAAGCAACGCCGCTGACGCGGTAACGACTGTATCCAATGAGGAAAGATCCGAGACTCGAGCGGCACATAACAAATTATCTGATGCTAAgacaaaaaatgaaaattgcgACGTATTGCTGGACAAtacaaaaaattctaataGCAAGACTGCCAAGATCTCGAGTCATACCGGTAGACGAAAAGTGTCTGCGGAGAGTCGGGGCGTGTCGAAAACGCAATCCACCTTACAGTGTACATATTGCGAGCAAAAGTTTAGTTTTCCTAGTGTGCTGGAGAGGCACGTGCGATCGCACACAAACGAACGGCCATATGTATGCGACGTGTGCAACAAGAGTTTCAAGCAGCTGGGTCATCTTAGCCAGCACTCGCTGACGCATCACGATTATCGCTCGTTTCAGTGCACGATGTGCGGTGTAAAATTCGACTCACTGGACTCGCTGAAACAACACGCGCATTTGCATAAAAGTAACGCGacaacaacgacgacgacgatgtcTAAGATTCGCGACGTATATCGTCTGTTTGAATGCGACAACTGCAAGAAGGTGTTCACGACGAAGAGCGTGCTGGAGCGGCATATATTCACGCATACGCAGGAGCGCCAGTACGACTGCAAGGTATGCGGCAAACGTTTCAAGCAAGCTGGCCACGTAAAATCGCACATGTTGGTCCACACAGGCGAGCGCCGCTTCCAGTGCACCATATGCTCAAAGCGCTTCAGCTTATCAAACTCGTTGAAGAAGCATATGTACGTGCATAACGGTGAGAAGCCGTATCAATGCGACGTATGCGGCGCGCGTTTCCTGGAGAAACGCAATCTCAATGGTCATCTGTTGACGCATACCAACGAGCGTCCGTATTGCTGCAAGATTTGTGGCAAACGGTATACTCTGGCAGACACTCTGCGCCGTCACGTGAGCGCCGCGCATGAGGACGGTCGTACTTATCAGTGCGAGATTTGCGCTAAGATGTTCAAGCAGCTAGCGCATCTGTCGGTGCACAAGAAGGTGCACAACGATGAACGGCCGTTTCAGTGTCATTTGTGCGAGAAGAATTTCAAGCACAAGAACGTGCTCAAGTCGCATCTAGCGATCCATGCGAATGTAAGACCGTTCGAGTGCGATGTGTGCAAGGCCACGTTCGTCAGGAAAACGAATTTGCAGACGCACATCTCATCCGCGCACATGAACGAGCGCCCGTACGCCTGCACCATTTGTGGCAAGCGTTTCAAACAGATCAGTCATCTGAATGGCCACGTAGTCGTGCACAGCAATCTGATGCCTTACAAGTGCGACTACTGCGACCGTCGATGTAATCGACTGGACAACCTGAAGAAACACATGCGTCTCCATACAAAGAACAAGGAATGA
Protein Sequence
MTKIRMNKEMPLSVEWMPQNAYVQNSLDHLLPGERNQRSFVFVKQEAEFFESTLNSQSVQNTVVHLQVSSKEKDKEIKQESSHLLSCQAGSLNQLPKKLTEGSDRLYNRGRIDIIEMTVEPTFRYKYFFVYENQPSKFVVLRALCNNTAEEVAKNLLDVLAIIGAPQVLQSGNGRKFAEQVVHELRSMWNDSLILHGDIPKCEVSCRDFKSLLESWMRKNPTKTWCEGLNFIQILHNSTYHSQNGKVPCDVLFGRDVCENFQNFGTEKDTESLWTEEEWIERLSRRKNKDIIATTKDTQKISNSTNYCEENDNEDTCSQKAFSRNDDVNGFSFVNIKNESLTSNMHVTNSTSISEIEVGKNELKNENMQFLKCKYCQKQYMKLGHLKNHMRTHKTQRVLRCKLCSKTFSVPRLYAKHMKQSHGQGKLADEEEEIPVRRSTRSNAADAVTTVSNEERSETRAAHNKLSDAKTKNENCDVLLDNTKNSNSKTAKISSHTGRRKVSAESRGVSKTQSTLQCTYCEQKFSFPSVLERHVRSHTNERPYVCDVCNKSFKQLGHLSQHSLTHHDYRSFQCTMCGVKFDSLDSLKQHAHLHKSNATTTTTTMSKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYACTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00867616;
90% Identity
iTF_00868269;
80% Identity
-