Agra023614.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anoplolepis gracilipes
Gene Symbol
-
Assembly
GCA_031304115.1
Location
JAPWJP010001755.1:1817009-1819885[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00016 0.028 16.1 5.0 2 23 376 397 375 397 0.97
2 15 0.00014 0.025 16.3 1.3 2 23 404 426 403 426 0.95
3 15 4.1e-06 0.00074 21.1 0.9 2 23 518 539 517 539 0.97
4 15 1.8e-05 0.0033 19.1 3.7 1 23 545 567 545 568 0.96
5 15 6.6e-05 0.012 17.3 1.2 1 23 573 595 573 595 0.97
6 15 1.1e-06 0.00021 22.8 1.4 1 23 618 640 618 640 0.98
7 15 1.3e-06 0.00024 22.6 1.2 1 23 646 668 646 668 0.97
8 15 1.1e-05 0.0019 19.8 2.4 1 23 674 696 674 696 0.98
9 15 0.0015 0.27 13.0 0.2 1 23 702 724 702 724 0.99
10 15 4.6e-05 0.0083 17.8 1.1 1 23 730 753 730 753 0.92
11 15 2.1e-05 0.0038 18.9 1.3 1 23 759 781 759 781 0.98
12 15 0.00046 0.083 14.6 4.7 1 23 787 809 787 809 0.98
13 15 5.8e-06 0.0011 20.6 0.4 1 23 815 838 815 838 0.97
14 15 1e-05 0.0018 19.8 0.5 1 23 844 866 844 866 0.95
15 15 1e-06 0.00018 23.0 4.8 1 23 872 894 872 894 0.99

Sequence Information

Coding Sequence
atgacaaaaataagaatgaaTAAAGAAATGCCGTTAAGTGTAGAATGGATGCCACAAAATGCATATGTGCGGAGTTCTTTGGATCATTTGCTGCCAGGTGAACGAAATCAGCGTAgttttgtatttgtaaaacaGGAAGcagaattttttgaaagtgcATTGAACTCACAATCTGTACAAAACACAGTCGTGCACTTGCAAGTTTCATCCAAAGAGAAGGATAACAAAGTCAAGCAAGAAAATAGCCATTTGAATGTGTTGCCTTGTCAAACAGGATCTTTAAATCACTCgcctaaaaaattaactgatgGTTctgaaagattatataataaaggtCGCATTGATATAATAGAAATGACAGTAGAACCGACAtttcgttataaatattttttcgtttatgAAAATCAACCATCCAAGTTTGTTGTATTAAGAGCTCTCTATAACAATACGGCTGAAGAAGTTGCAAAGAATTTATTAGACGTATTGGCAGTCATAGGGGCACCAAGAGTGCTACAGAGTGGTAATGGACGTAAGTTTGCTGAACAAGTTGTACATGAACTACGTTCATTATGGAATGATTCCCTCATATTGCATGGGGATGTACCTAAATGTGAAGTTAGCTGCAGGGATTTTAAAAGCTTGCTCGAATCCTGGATGAGAAAGAATCCTACCAGGACCTGGTGCGAAGGACTGAACTTTATACAGATTCTTCACAACTCGACATACCGCAGTCAGAATGGTAAAGTTCCATGCGACGTATTATTTGGACGAGACGTACGCGAAAACTTTCAAAACTTTAATacagaaaaagatatagataGTCTATGGACAGAGGAAGAATGGATCGAACATTTGTCAcatagagaaaataaagatatagttGCAACGACGAAAGACACGCAGAGGACATCGAATAGTATCAAttattATGAAGAAAACGACAACGTACAAGATACATGTAGTCAAAAGGCATTTTCGAGAAACGACGATGTAAATGGCTTTAGTTTtgtcaatgtaaaaaatgaatctTTTACGAGCAATAAACGCGCAACAGATACAACGAACAAAGATGAAACAGaagtaagaaaaaatgaattgaAAGCCGACGAGAATACGCAATTTCTCAAGTGCAAGTACTGCCAAAAGCAATACATGAAGCTAGGACATTTGAAGAACCACATGAAAACTCACAAAGCGCAACGGGTTCTTCGATGCAAGCTGTGCAGTAAAACATTCAGCGTCCCAAGATTATACGCGAAGCACATGAAGCAGTCGCATGGGCAAGAGAAATTAGCTGAGGAAGAGGAGGTACCAGTTAGAAGAAATACTAGAAGCAATACCTCTGACGCGGTAACGACTATATCCAATGAAGAAAGATCTGAGATTCGAGCGACACATAACGAATTATCTGATAACGAGACGAACGAAGAATGCGACGCATCGCTGGACGATACAAAAAATTCCTACAAAACTGCCAAGATCTCGAGTCACACCAATAGACGAAAGTTATCCGCGGAAAGTCGGAGCGCGTCGAAGACGCAATCTACCTTACAGTGTACATATTGCGAGCAAAAGTTTAGCTTCCCCAGCGTGCTGGAAAGGCACATGAGGTCGCACACGAACGAACGACCGTACGTATGCGACGTGTGCAATAAGAGTTTCAAACAGCTGGGCCACCTTAGTCAGCACTCACTGACGCATCACGACTATCGCTCGTTCCAATGCACGGTGTGCGGCATAAAGTTTGACTCGCTGGACTCGCTGAAACAGCACGCGCATTCGCACAAAGGTGACGCGACAACgacaacaacgacgacgacaacatCCAAAATCCGCGACGTCTATCGTCTGTTTGAATGCGACAACTGTAAGAAGGTGTTCACGACGAAGAGCGTGCTGGAACGACATATATTCACGCACACGCAGGAGCGTCAATATGACTGCAAGGTGTGCGGCAAACGTTTCAAGCAAGCCGGCCACGTAAAATCGCACATGCTGGTTCATACAGGAGAGCGTCGCTTCCAGTGTACCGTGTGCTCGAAGCGCTTCAGCTTGTCGAACTCGTTGAAGAAACACATGTACGTGCACAATGGCGAGAAACCGTACCAATGCGACGTATGCGGTGCGCGTTTCTTGGAGAAGCGCAATCTCAACGGTCATCTATTGACGCATACTAACGAGCGTCCATATTGCTGCAAGATTTGCGGCAAACGGTACACTCTGGCGGATACTTTGCGCCGTCACGTGAGTGCCGCGCACGAGGACGGTCGTACTTATCAATGTGAGATCTGTGCCAAGATGTTTAAGCAGCTGGCGCATCTGTCAGTTCACAAAAAGGTGCATAATGATGAACGGCCGTTTCAATGTCACTTGTGCGAAAAGAACTTCAAACACAAGAACGTGCTCAAATCGCATCTGGCGATCCACGCGAATGTACGACCGTTTGAGTGCGATGTGTGTAAGGCCACATTCGTCAGAAAAACGAATTTGCAGACGCACATCTCGTCCGCGCATATGAACGAACGTCCGTACGCCTGCACCATTTGCGGCAAACGTTTCAAGCAAATCAGCCATCTGAACGGCCACGTGGTCGTGCACAGCAATCTGATGCCCTACAAGTGCGACTACTGTGATCGTCGGTGCAATCGACTGGACAACCTGAAGAAACACATGCGCCTCCATACAAAGAACAAGGAATGA
Protein Sequence
MTKIRMNKEMPLSVEWMPQNAYVRSSLDHLLPGERNQRSFVFVKQEAEFFESALNSQSVQNTVVHLQVSSKEKDNKVKQENSHLNVLPCQTGSLNHSPKKLTDGSERLYNKGRIDIIEMTVEPTFRYKYFFVYENQPSKFVVLRALYNNTAEEVAKNLLDVLAVIGAPRVLQSGNGRKFAEQVVHELRSLWNDSLILHGDVPKCEVSCRDFKSLLESWMRKNPTRTWCEGLNFIQILHNSTYRSQNGKVPCDVLFGRDVRENFQNFNTEKDIDSLWTEEEWIEHLSHRENKDIVATTKDTQRTSNSINYYEENDNVQDTCSQKAFSRNDDVNGFSFVNVKNESFTSNKRATDTTNKDETEVRKNELKADENTQFLKCKYCQKQYMKLGHLKNHMKTHKAQRVLRCKLCSKTFSVPRLYAKHMKQSHGQEKLAEEEEVPVRRNTRSNTSDAVTTISNEERSEIRATHNELSDNETNEECDASLDDTKNSYKTAKISSHTNRRKLSAESRSASKTQSTLQCTYCEQKFSFPSVLERHMRSHTNERPYVCDVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGIKFDSLDSLKQHAHSHKGDATTTTTTTTTSKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYACTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00867616;
90% Identity
iTF_00868269;
80% Identity
-