Cflo004411.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Camponotus floridanus
Gene Symbol
-
Assembly
GCA_003227725.1
Location
NW:12054-15780[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2e-05 0.0016 18.2 5.2 2 23 371 392 370 392 0.97
2 15 5.2e-05 0.0041 16.9 1.9 2 23 399 421 398 421 0.95
3 15 2.5e-06 0.0002 21.1 0.9 2 23 517 538 516 538 0.97
4 15 1.1e-05 0.00088 19.1 3.7 1 23 544 566 544 567 0.96
5 15 6.5e-05 0.0052 16.6 1.2 1 23 572 594 572 594 0.97
6 15 6.9e-07 5.5e-05 22.8 1.4 1 23 616 638 616 638 0.98
7 15 8e-07 6.4e-05 22.6 1.2 1 23 644 666 644 666 0.97
8 15 6.4e-06 0.00051 19.8 2.4 1 23 672 694 672 694 0.98
9 15 0.0009 0.071 13.0 0.2 1 23 700 722 700 722 0.99
10 15 2.8e-05 0.0022 17.8 1.1 1 23 728 751 728 751 0.92
11 15 1.3e-05 0.001 18.9 1.3 1 23 757 779 757 779 0.98
12 15 0.00028 0.022 14.6 4.7 1 23 785 807 785 807 0.98
13 15 3.5e-06 0.00028 20.6 0.4 1 23 813 836 813 836 0.97
14 15 6.2e-06 0.00049 19.8 0.5 1 23 842 864 842 864 0.95
15 15 6.1e-07 4.8e-05 23.0 4.8 1 23 870 892 870 892 0.99

Sequence Information

Coding Sequence
ATGACAAAAATAAGAATGAATAAAGAAATGCCGTTAGGTGTAGAATGGATGCCACAAAATGCATATGTGCGAAGTTCCTTGGATCATTTGCTGCCAGGTGAACGAAATCAACGCAGTTTTGTATTTGTAAAACAGGAAACAGAATACTTTGAAAGTGCATTAAACTCACAACATGTACAAAATACAGTCGTGCACTTGCAAGTTTCCTCTAAAGAGAAGGATAAGGAAATCAAGCAAGAAAGTAGCCATTTGGATCCTTGTCAAACAAGCCCTTTAAATCAGTCGcctaaaaaattgattgagaGTTCTGAGAGATTGTATAATAGAGGTCGCATTGATATAATAGAAATGACAGTAGAACCAACATTccactataaatattttcttgtttacGAAAATCAGCCATCCAAGTTTGTTGTACTAAGAGCTCTCTGCAACAATACAGCTGAAGAAGTTGCAAAGAATTTGTTAGATGTATTGGCGATCATAGGGGCACCACGAGTACTACAGAGTGGTAATGGACGTAAGTTTGCTGAACAAGTTGTACATGAACTGCGTTTACTATGGAATGATTCCCTCATATTGCACGGGGATGTACCTAAGTGTGAAGTTAGCTGCAGGGATTTTAAAAGCTTGCTTGAATCTTGGATGAGGAAGAATCCTACCAAGACCTGGTGTGAAGGACTGAACTTTATACAGATTCTTCACAATTCAACATACCGCAGTCAGAATGGTAAAGTTCCATGCGATGTATTATTCGGACGAGACATACGTGAAAACTTTCAAAACTTTGATGTAGAAAAGGATACAGAGAGTTTGTGGACAGAGGAAGAATGGATTGAATATTTGTCAcatggaaaaaataaagatgtaGTTACAAAAGACACACAAAGGATATCGGATAgtatcaatTATTGTGAAGAAAATGATAACATACAAGATACATGCAGTCAAAAAACATTTTCGAAAAACGACGACGTAAATGGGTTTAGTTTTGTCAATATAAAGAATGAATCTGTCACGAGCAATGTGCATGCAACAGATTCAAATAGAGATAAAATTGaagcagaaaaaaatgaattaaagatcGATGACAATACACAATATCTTAAGTGCAAATACTGCCAAAAGCGATACATGAAGCTGGGACATTTGAAGAATCACATGAGAACTCATAAAGCGCAACGAGTTCTCCGATGCAAGTTGTGCAATAAAACATTCAGTGTCCCAAGATTATACTCGAAGCACATGAAGCAGTCGCATGGACaagataaattgattaaagctGATGAGGAAGAGGAGGTACCAGTTAGAAGAAATACCAGAAGCAATACTGCTGACACGGTAACGACCGTTTCCAATGAAGAAAGATCCGAGATTCGGACATATAACGAAATTTCTGATCCCGAGACAACGGATGAAGGTTGCGACGCATTACTAGATGATACGAAAAATTCCTATAACAAGACTGCCAAGATCTCGAGTCATACTGGTAGACGAAAGTTGTCTGCGGAGAGTCGGAGCGTGTCGAAATCGCAATCTACTTTACAGTGTACATATTGCGAGCAAAAGTTTAGCTTTCCCAGCGTGTTGGAGAGGCACATGCGATCGCATACGAACGAACGACCGTATGTGTGCGATGTGTGCAACAAGAGTTTCAAGCAGCTAGGCCACCTTAGCCAGCACTCGTTAACGCATCACGACTATCGCTCGTTCCAGTGCACGGTGTGCGGCGTAAAATTCGATTCGCTAGACTCGCTGAAGCAACACGCGCATTCGCATAAAGGTGACACGACAACAAtaacgacaacgacgacatCCAAGATCCGTGACGTTTATCGTCTATTTGAATGCGACAACTGCAAAAAGGTATTTACGACGAAGAGCGTGCTGGAACGacatatatttacacacacGCAGGAACGTCAATACGACTGCAAGGTGTGCGGCAAACGTTTCAAGCAGGCTGGCCACGTAAAATCGCACATGCTAGTCCATACAGGCGAGCGCCGCTTTCAGTGTACCGTGTGCTCGAAACGTTTCAGCTTATCGAACTCGTTGAAGAAGCACATGTACGTGCACAATGGTGAGAAACCGTATCAATGCGACGTATGCGGTGCGCGTTTCCTGGAGAAGCGCAATCTCAACGGTCATCTGCTGACGCACACCAACGAACGTCCGTATTGCTGCAAAATCTGCGGCAAACGATACACTTTGGCAGACACTCTGCGCCGTCACGTGAGCGCCGCACACGAGGATGGTCGTACTTATCAGTGTGAGATCTGCGCCAAAATGTTCAAGCAGCTGGCGCATTTATCGGTGCACAAAAAGGTACACAACGATGAACGACCGTTCCAGTGTCATCTGTGTGAGAAGAATTTCAAGCACAAGAACGTGCTCAAGTCGCATCTGGCGATCCACGCGAATGTACGACCGTTTGAATGCGATGTGTGCAAGGCCACATTCGTCAGGAAGACAAATCTACAGACGCACATCTCGTCCGCGCACATGAACGAGCGTCCGTACGCCTGCACCATTTGTGGCAAGCGCTTCAAGCAGATCAGTCATCTGAACGGTCACGTCGTTGTGCACAGCAATCTGATGCCCTACAAGTGCGACTATTGCGATCGTCGATGCAATCGATTGGACAACCTGAAAAAACACATGCGTCTTCACACAAAGAACAAGGAGTAA
Protein Sequence
MTKIRMNKEMPLGVEWMPQNAYVRSSLDHLLPGERNQRSFVFVKQETEYFESALNSQHVQNTVVHLQVSSKEKDKEIKQESSHLDPCQTSPLNQSPKKLIESSERLYNRGRIDIIEMTVEPTFHYKYFLVYENQPSKFVVLRALCNNTAEEVAKNLLDVLAIIGAPRVLQSGNGRKFAEQVVHELRLLWNDSLILHGDVPKCEVSCRDFKSLLESWMRKNPTKTWCEGLNFIQILHNSTYRSQNGKVPCDVLFGRDIRENFQNFDVEKDTESLWTEEEWIEYLSHGKNKDVVTKDTQRISDSINYCEENDNIQDTCSQKTFSKNDDVNGFSFVNIKNESVTSNVHATDSNRDKIEAEKNELKIDDNTQYLKCKYCQKRYMKLGHLKNHMRTHKAQRVLRCKLCNKTFSVPRLYSKHMKQSHGQDKLIKADEEEEVPVRRNTRSNTADTVTTVSNEERSEIRTYNEISDPETTDEGCDALLDDTKNSYNKTAKISSHTGRRKLSAESRSVSKSQSTLQCTYCEQKFSFPSVLERHMRSHTNERPYVCDVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDSLKQHAHSHKGDTTTITTTTTSKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYACTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00867616;
90% Identity
iTF_00868269;
80% Identity
-