Nful009178.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nylanderia fulva
Gene Symbol
Snai1
Assembly
GCA_005281655.1
Location
NW:15042-19091[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4.7e-05 0.0038 17.3 4.8 2 23 374 395 373 395 0.97
2 15 9.9e-05 0.0079 16.3 1.3 2 23 402 424 401 424 0.95
3 15 3e-06 0.00024 21.1 0.9 2 23 515 536 514 536 0.97
4 15 5.2e-06 0.00042 20.3 1.9 1 23 542 564 542 564 0.98
5 15 7.9e-05 0.0063 16.6 1.2 1 23 570 592 570 592 0.97
6 15 8.3e-07 6.7e-05 22.8 1.4 1 23 613 635 613 635 0.98
7 15 9.6e-07 7.7e-05 22.6 1.2 1 23 641 663 641 663 0.97
8 15 7.7e-06 0.00062 19.8 2.4 1 23 669 691 669 691 0.98
9 15 0.0011 0.087 13.0 0.2 1 23 697 719 697 719 0.99
10 15 3.4e-05 0.0027 17.8 1.1 1 23 725 748 725 748 0.92
11 15 1.5e-05 0.0012 18.9 1.3 1 23 754 776 754 776 0.98
12 15 0.00033 0.027 14.6 4.7 1 23 782 804 782 804 0.98
13 15 4.3e-06 0.00034 20.6 0.4 1 23 810 833 810 833 0.97
14 15 7.4e-06 0.0006 19.8 0.5 1 23 839 861 839 861 0.95
15 15 7.3e-07 5.9e-05 23.0 4.8 1 23 867 889 867 889 0.99

Sequence Information

Coding Sequence
ATGACAAAAATAAGAATGAATAAAGAAATGCCATTAAATGTAGAATGGATGCCACAAAATGCATATGTGCGCAATTCTTTGGATCATTTGCTGCCAGGTGAACGCAATCAGCGTAATTTTGTATTTGTAAAACAGGAAACGGAATTCTTCGAAAGTGCATTAAATTCACAATCGGTACAAAACACAGTTGTGCATTTGCAAGTTTCATCTAAAGAGAAGGATAAAGAGATCAAGCAAGAAAGCAGTCATTTGGATGCATTAtCTTGTCAAGTAGGATCTCTAAATCAATCTCCTCAAAAACTGAAAGATGGTTCTGAGAGATTATATAATAGAGGTCGAATTGATATAATAGAAATGACAGTAGAACCGacattttgttataaatatttttttgtttatgaaAATCAACCATCCAAGTTTGTTGTATTAAGAGCTCTCTACAATAACACGGCCAAAGAAGTTGCAAAGAATTTGTTAGATGTATTAGCGATTATAGGGGCACCACGAGTGCTACAAAGTGGTAATGGACGTAAGTTTGCCGAACAAGTTGTACATGAGCTACGCTTATTATGGAAAGATTCTCTCATAATGCATGGGGATGTACCTAAGTGTGAAGTTAGCTGCAGGGATTTTAAAAGCTTGCTTGAATCCTGGATGAGAAAAAATCCTACTAGGGCCTGGTGCGAAGGACTGAATTCCATACAAATTCTTCACAACTCGACATACCATTGTCAGAATGATAAAGTTCCATGCGACATATTATTTGGACGAAATGTACGCGAAAACTTTCAAAGCCTCTGTATAGAAAAAGATACAGAAAGCCTATGGACAGAGGAAGAATGGATCAAACATTTGTCACATAAGGAAAATAGAGATATAATTACAACAAAAGATACACAGAAGACATCGGATAATATCAATCATTGTGAAGAAAACGACAATGTACAAGAAAGGTGCAATCAGAAGGCATTTTCGAGAAGTGACAATATAAATGGCTTTAGTTTTGTCAATGTAAAGAATGAATCTTCCACGAGCAATGCACGTGTAACGGAGTCAACGAGTAGAAGTGAAATAAATGTAGGAAAAACCGAATTGAAAATCGAGAGTACGCAATTTCTCAAGTGTAAGTATTGCCAGAAGCAGTACATGAAGCTGGGACATTTGAAGAACCACATGAGAACTCACAAAACACCACGGGTTCTCCGATGCAAATTGTGCAGTAAAACATTCAGCGTCCCAAGATTATACGCGAAGCACATGAAACAGTCTCATGGGCAAGATAACTTAGCTGGCGAGGAAGAGGAGATACCGGTTAGTAGAAATACTAGAAGCAACGACGCAGCGAAGACTCTATCTAATGAAAGATCTGAGAGTAGAACGGTACACAATGAATTATCCAATCTCGAGACGACGAACGAAAATTGCGACGTGTCGCTGGACAATACAGAAACTTCCAGCAAGACTACTAAGATTTCGAGTCATATCAGCAGACAAAAGTCGTCCACAGAGAGTCGGAGCGTATCGAAGATACAGTCCACCTTACAGTGTACATATTGCGAGCAAAAGTTTAGCTTCCCCAGCGTGCTGGAGAGGCACATGCGATCGCACACAAACGAACGACCTTACGTGTGCGACGTGTGCAACAAAAGCTTCAAGCAGCTGGGTCATCTCAGTCAGCACTCACTGACGCATCAGGATTATCGTTCGTTCCAGTGCACGGTATGCGGGGTAAAGTTCGACTCGTTGGACTCGCTGAAGCAGCACGCGCATTCGCACAAGGGCGACGCGACGACAACCACGACGACGATGCCCAAGATCCGCGATGTCTATCGGCTGTTCGAGTGTGACAACTGCAAGAAGGTATTTACCACGAAAAGCGTCTTGGAGCGGCACATATTCACGCACACGCAGGAGCGTCAGTACGACTGCAAGGTCTGCGGGAAACGTTTCAAACAGGCCGGCCACGTCAAGTCGCACATGCTGGTCCATACTGGCGAACGCCGTTTCCAGTGCACCGTGTGCTCGAAGCGCTTCAGCCTGTCGAACTCGTTGAAGAAGCACATGTACGTGCACAACGGTGAGAAGCCGTATCAGTGCGACGTATGCGGGGCGCGTTTCCTGGAGAAGCGCAATCTCAATGGCCACTTGTTGACTCACACCAACGAGCGTCCGTATTGCTGCAAGATCTGCGGGAAACGGTACACCCTGGCGGACACTCTGCGCCGTCACGTGAGCGCCGCCCACGAGGACGGTCGTACTTATCAGTGCGAGATCTGCGCGAAAATGTTCAAGCAGCTGGCGCATCTTTCGGTTCACAAGAAGGTGCACAACGACGAGCGGCCGTTCCAGTGTCACCTTTGCGAGAAGAACTTCAAGCACAAGAATGTGCTCAAGTCGCACCTGGCGATCCACGCGAACGTTAGGCCGTTCGAGTGCGACGTGTGCAAGGCCACGTTTGTCAGGAAGACGAATTTGCAGACGCACATCTCGTCCGCGCATATGAACGAACGTCCGTATGCCTGTACCATTTGCGGTAAGCGTTTCAAACAGATCAGTCATCTCAACGGCCACGTGGTCGTGCACAGCAACCTGATGCCCTACAAGTGTGACTACTGCGACCGCCGCTGCAATCGACTGGACAACCTAAAGAAACATATGCGTCTCCATACAACAAGGAGTCTGAACAAGGAGTGA
Protein Sequence
MTKIRMNKEMPLNVEWMPQNAYVRNSLDHLLPGERNQRNFVFVKQETEFFESALNSQSVQNTVVHLQVSSKEKDKEIKQESSHLDALSCQVGSLNQSPQKLKDGSERLYNRGRIDIIEMTVEPTFCYKYFFVYENQPSKFVVLRALYNNTAKEVAKNLLDVLAIIGAPRVLQSGNGRKFAEQVVHELRLLWKDSLIMHGDVPKCEVSCRDFKSLLESWMRKNPTRAWCEGLNSIQILHNSTYHCQNDKVPCDILFGRNVRENFQSLCIEKDTESLWTEEEWIKHLSHKENRDIITTKDTQKTSDNINHCEENDNVQERCNQKAFSRSDNINGFSFVNVKNESSTSNARVTESTSRSEINVGKTELKIESTQFLKCKYCQKQYMKLGHLKNHMRTHKTPRVLRCKLCSKTFSVPRLYAKHMKQSHGQDNLAGEEEEIPVSRNTRSNDAAKTLSNERSESRTVHNELSNLETTNENCDVSLDNTETSSKTTKISSHISRQKSSTESRSVSKIQSTLQCTYCEQKFSFPSVLERHMRSHTNERPYVCDVCNKSFKQLGHLSQHSLTHQDYRSFQCTVCGVKFDSLDSLKQHAHSHKGDATTTTTTMPKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYACTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTTRSLNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00867616;
90% Identity
-
80% Identity
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