Lcal013753.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum calceatum
Gene Symbol
-
Assembly
GCA_963966675.1
Location
OZ016545.1:3669292-3672332[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5.2 5.7e+02 1.9 0.5 5 20 319 334 318 336 0.91
2 15 0.086 9.4 7.5 4.7 2 23 398 420 397 420 0.96
3 15 0.0099 1.1 10.5 0.1 1 23 426 448 426 448 0.92
4 15 3.5e-06 0.00038 21.3 3.4 1 23 454 476 454 476 0.96
5 15 0.00019 0.02 15.9 2.6 1 23 485 507 485 507 0.97
6 15 6.9e-06 0.00076 20.4 1.8 1 23 513 535 513 535 0.97
7 15 9.9e-07 0.00011 23.1 0.9 1 23 540 562 540 562 0.97
8 15 0.28 31 5.9 6.0 1 23 569 591 569 591 0.99
9 15 0.0015 0.16 13.0 0.7 2 23 611 632 610 632 0.97
10 15 0.011 1.2 10.4 0.4 2 23 640 662 639 662 0.96
11 15 0.00044 0.048 14.7 0.6 1 23 668 690 668 690 0.96
12 15 0.00032 0.035 15.2 3.2 1 23 696 718 696 718 0.98
13 15 2.5e-08 2.7e-06 28.1 0.4 1 23 724 746 724 746 0.99
14 15 1.4e-05 0.0015 19.5 3.6 1 23 752 774 752 775 0.96
15 15 0.00044 0.048 14.7 0.3 2 23 780 801 779 801 0.96

Sequence Information

Coding Sequence
ATGAAAATAGTTTGTGCTGCAAAGAATTGTAAATACTGTTCGGAAACTGAAGACTCGACGCAcgtcatttttattaatttcccgAACGATGACATgTCTAAAATATGGGCACACCATTGCGGCAGATCGGAccttttaacaaagtctaacgaaGAGTTACATTTAAATTACTATGTCTGTTCCGACCACATCGAAGACCATTACTATTTGAACAAAACTGACCCCATTATAATAGACCAACATGCTGTTCCTACGTTATTTGGATCAGACAATATAGCAAAGAAAAATGTAGCAAATATGTTTGTTAGGAACGAACAAATTGAAGTAACAAACAATGTCGAACTAACGAATTGCGATATAGATGCCGAGATGGACCAGTATCAAGATATTAACACAAGGTTTCCCAATTTATGTAGAATATGTGGCGAGCCTTGTTTAGACGGTATAGAAATCTTTGCCGAGAAAGGTATAGAATTAAAGATAAGAGAAAAAATGAGTTTACACTTGCCGATAAATCCTCATTTGGAAGACTTGATGCCGCAAAAGATATGTAGCAATTGTTATGATAATTTGGAAGCAGCTCATTTATTAGTTACGACATCTTTGAAGACCGACATGAGACTGAGAAAGTTTCTAAACCTCAAAGAAGGATTAAGTTATTACGACAATAAATACAATGAAATAGTACGAACGTGTTCTTCGGAGATGATAAACGAGATGTACATGAACAGAACAATTCATACTATGTCTATAGAACTATCGTCCAACGAAGGAAGAGAAGTAATAATGAATCAGGATGTGCCTACAAAATTGAGTTACTCGGAGGATCCGAAGAAAGCTAGCTCTTTGAACAACATAAGAAAAGAGATGCAATCCGAATTAAATAGACTTATCGAATCGTACAGCGGTGCGCAAAACGATATGGCAAACGGTATTAACGAGATTGCATCGTTCCACTGTAAAGATACGTTTAAAACTCGAGCAATGTTTGAGAATCACAAGATACTGTGCGACGAAGATGAAATAATACTACAGAAGCAAAAAGAAATATCTGGTAGTATAAATGCGAATGAATCATTAGTGGTTTTAAATTGTAAACCTTTTCAAGAAGAACATTACGAAGTCACGGATAAACAGCACGCGACAGAAATTGATAACATAGATACAATTGCAATGGTGGAAACAAATAAGAAATGTGGTCACTGTCGGTCCATTTATAGCACCAAAAAAGAACTATTGAATCACATCGCGAAATGTCACGAAAGTCAACTATTGTTCGCGTGCATTATCTGcgacaaaaaatatgaaaaatggtCGAGCTTAGATGTTCACGAGGCTACGCACAGAACAGATAAACCGTATCTCTGCGATTTATGCGGAAAGAgttttaagcattcaaataatctaaGAGGTCACAAGAGGACCCATTTAGACGACTCGAAAAAGAAACGGCACACCTGCGAAATTTGTGGGAACGCGTTTAGATCCAGATTTCACTTGGGAGAGCACATGAACCAGCACAACGACCACAAACCATACTTTTGCGAAAAGTGTGGCAAAGCTTTTTCCAAGAGGATACAATTAAGACAACACAGACTATCTCATGGAACGAATAAACATGTTTGCCCGATATGTGGAGCGTCTTTCAATCGCAAAGGAAATATGAATACTCACCTGAAAAGACACAGCAACGACAGCGGAATGTACACCTGTAGCATTTGCGCGTGCAAATGTCAGTCGATGAGCGAGTTAAAATTGCATCGGAAGAGACACACGGAGGAAGATATTATGGAAAGTATTAAGAAAAAGTACTCCGATCGAACGGAGTGGCAGTGCAAAACTTGTAGCCAGATGTTCGCCGTGCGAACAGATTTTTTAAACCACGTACGCTCGCATAAAGGAGAAAGACCGAGGGTTGAATGTGATATTTGTAGCAAACAGTTGGCTAGCAAAAATTCTTTAATCTATCATAAGAAATCTATGCATTCCAAGGAGAGGCCACACATGTGTCAATACTGCGGGGAATCGTTCGTTTCCAAAGAGGCGCGTCTCATACACGAAAGGATCCACACCGGAGAACGTCCTTACGTTTGCAAGATATGCAAAATGGAATACAAGTGTTCCAGCAATCTCAACCAGCATATGAAAATTCATTCGGACGTTAAACCCTATAGATGTACATACTGCGGTAGAAGTTTCACGCGCAAGGGAGCGCTGGCTGTTCACCTAAGAATCCATACAGGCGAAAAACCCTTTCCCTGCGAAACCTGTGGCAGAAGATTTTCGCAGAAAAACGATATGTTGAAACATACGAAAACGCATCACGCGAAACTGTTGCGTTGCGAGAAATGCGACGAGGTTTTCGCGAAGAAGAAGGATATTCTGAAGCATCTCGCGATGCACAAACAAAGTGACCTTATAGTTTAA
Protein Sequence
MKIVCAAKNCKYCSETEDSTHVIFINFPNDDMSKIWAHHCGRSDLLTKSNEELHLNYYVCSDHIEDHYYLNKTDPIIIDQHAVPTLFGSDNIAKKNVANMFVRNEQIEVTNNVELTNCDIDAEMDQYQDINTRFPNLCRICGEPCLDGIEIFAEKGIELKIREKMSLHLPINPHLEDLMPQKICSNCYDNLEAAHLLVTTSLKTDMRLRKFLNLKEGLSYYDNKYNEIVRTCSSEMINEMYMNRTIHTMSIELSSNEGREVIMNQDVPTKLSYSEDPKKASSLNNIRKEMQSELNRLIESYSGAQNDMANGINEIASFHCKDTFKTRAMFENHKILCDEDEIILQKQKEISGSINANESLVVLNCKPFQEEHYEVTDKQHATEIDNIDTIAMVETNKKCGHCRSIYSTKKELLNHIAKCHESQLLFACIICDKKYEKWSSLDVHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHTCEICGNAFRSRFHLGEHMNQHNDHKPYFCEKCGKAFSKRIQLRQHRLSHGTNKHVCPICGASFNRKGNMNTHLKRHSNDSGMYTCSICACKCQSMSELKLHRKRHTEEDIMESIKKKYSDRTEWQCKTCSQMFAVRTDFLNHVRSHKGERPRVECDICSKQLASKNSLIYHKKSMHSKERPHMCQYCGESFVSKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSDVKPYRCTYCGRSFTRKGALAVHLRIHTGEKPFPCETCGRRFSQKNDMLKHTKTHHAKLLRCEKCDEVFAKKKDILKHLAMHKQSDLIV