Hrub013614.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Halictus rubicundus
Gene Symbol
-
Assembly
GCA_028454235.1
Location
CM052174.1:11813079-11815897[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.007 0.57 10.7 2.4 2 23 408 430 407 430 0.96
2 14 0.014 1.1 9.8 0.1 1 23 436 458 436 458 0.92
3 14 2.9e-06 0.00024 21.3 3.4 1 23 464 486 464 486 0.96
4 14 0.00026 0.021 15.2 1.8 1 23 495 517 495 517 0.96
5 14 2.7e-05 0.0022 18.3 2.0 1 23 523 545 523 545 0.97
6 14 8.4e-07 6.9e-05 23.0 0.9 1 23 550 572 550 572 0.97
7 14 0.022 1.8 9.2 7.8 1 23 579 601 579 601 0.99
8 14 0.00024 0.02 15.3 1.6 2 23 621 642 620 642 0.97
9 14 0.0011 0.089 13.3 0.2 2 23 650 672 649 672 0.96
10 14 0.014 1.1 9.8 0.6 1 23 678 700 678 700 0.96
11 14 0.00027 0.022 15.2 3.2 1 23 706 728 706 728 0.98
12 14 3.6e-08 2.9e-06 27.3 1.3 1 23 734 756 734 756 0.98
13 14 2.7e-06 0.00022 21.4 2.8 1 23 762 784 762 785 0.96
14 14 0.0012 0.1 13.1 1.0 2 23 790 811 789 811 0.96

Sequence Information

Coding Sequence
ATGAAAATAGTTTGTGCTGCAAAGAATTGTAAATACTCTTCAGAAACTGAAGACTCGACACACGTTATTTTTATTAATTTCCCGAACGATGATATGTCTAAAATATGGGCACACCATTCTGGCAGAACAGACCTTTTAGCAAAGTCTAACGAAGAATTACATTTAAATTACTACGTATGTTCTCATCACATTGAAGACCATTACTATTTGAACAAAACTGAACCTATTATAATAGACCAACATGCTGTTCCTACATTATTCGGATCAGACGATATAGCGAAAAGAAATGTACAAAATATGTTTGTTAGAAACGAGCAAATTGAAATAACAGACAATGTTGAGTTAACAGATTGTGATGTAGATGTTGAGATGGACCAGTATCAAGATATCAACACAAGGTTTTCCAATTTATGTAGAATATGTGGCGAATCATGTTTGGATGGTATAGAGATCTTCACTGAGAAAGGCATAGAATTAAAAATAAGAGAAAAAATGAGTTTACACTTGCCAATAAATCCCAGTTTAGAAGACTTAATGCCGCAAAAAATATGTAGCAATTGTTATGATAATTTGGAAACAGCTCATTTATTAGTTACGACATCTTTAAAGACTGATATGAGATTGCGAAAGTTTCTAAATATCAAGGAAGGATTAAGTTATTATGACAATAAATACAATGAAATAGTAAAAACATGTTCTTCGGAAGTGATAAATGAGATGTACATGAACAGAACAATCCATACTATGTCTATAGAATTATCACCTAATGAAGGAGAAGAGGTAATAATGAATCAGGATGTGCCCGCAAAATTGAGTTATCCGGAGGATATTGTTCTAAAGAAAGCTAGCTCTTCAAACAACATAAGAAAAGAAATGCAATCTGAATTAAATAGACTTATTGAATCGTACAGTGATGCACAAAATCATATAGCAAACGGTATTAACGAGATTGCATCATTACACTGTAAAGATACATTTAAAACTCGAGCAATGTTTGAGAATCAGAAGATATTGTGCGACGAAGATGAGATAATTGTACAGAAGCAGAAAGAATTATCTGGTAGTATAAACGCTAATGAATCATTAGTGCTTTTAAATTGCAAACCTTTTCATGAAGAAAATTACGAAATCACGGATAAACAGCCTGCAACAGAAGTTGACTGCAATGTTAATAAAAATACCGATAATTTCAATATTATTGCAATGGCGGAAACAAATAAAAAATGTGGTCACTGTCAGTCCATTTATAGCACCAAAAAAGAACTATTAAATCACATCGCAAAACGTCACGAAAGTCAACTGTTATTCGCGTGCATTATCTGCGATAAAAATTATGAAAAATGGTCGAGTTTAGACGTTCACGAAGCTACGCACAGGACAGATAAACCGTATCTGTGTGATTTATGTGGAAAGAGTTTTAAGCACTCCAATAATCTGAGGGGTCACAAGAGAACCCATTTAGACGACTCGAAAAAGAAACGACACGCCTGTGAAATTTGTGGGAACGCGTTTAGGTCTAGATTTCACTTGGGAGAACACATGAATCAGCACAATGACCACAAACCATACTTTTGCGAAAAGTGTGGAAAAGCTTTTTACAAGAGGATACAATTAAGGCAACACAGACTATCTCATGGAATGAATAAACATGTTTGTCCAATATGTGGAGCATCTTTCAATCGGAAAGGAAATATGAATACTCACCTCAAAAGACATAGCAACGATAGTGGAATGTACACCTGTAGTATTTGCACGTGCAAATGCAAATCGATGAGCGAATTAAAATTGCATCGGAAGAAACATACGGAGGAAGATATTATGGAAAGTATTAAAAAAAAGCACTCTGATCAAACAGAATGGCAATGCAAAACTTGTAGTCAGATGTTCACCAATCGAACTGATTTTTTAAACCACGTACGCTTGCATAAAGGAGAAAGAACGAGAGTTGAATGTGATATTTGTGGCAAACAGTTGGCTAGTAAAAATTCTTTAATATACCATAAGAAATCTATGCATTCCAAGGAGAGGCCGCACATGTGTCAATATTGCGGGGACTCGTTCGTTTCCAAAGAGGCACGTCTCATTCACGAAAGGATCCACACTGGAGAACGTCCTTACGTTTGCAAAATATGCAAAATGGAATACAAGTGTTCCAGCAATCTCAATCAGCATATGAAAATTCATTCGGATGTTAAACCCCATAGGTGTACATATTGCGGTAAAAGTTTCACACGCAAGGGAGCGCTAGCTGTTCATCTAAGAATCCATACAGGCGAAAAACCCTTTCCCTGCGAAATTTGCGGCAGAAGATTTTCGCAAAAGAACGATATGTTGAAACATACGAAAACGCATCACGCGAAAATGTTGCATTGCGAGAAATGCGACGAAGTTTTCGCGAAAAAGAAAGACATTTTAAAGCACCTCTCGGTGCATAAACAAAGTGACCTTATAGATTAA
Protein Sequence
MKIVCAAKNCKYSSETEDSTHVIFINFPNDDMSKIWAHHSGRTDLLAKSNEELHLNYYVCSHHIEDHYYLNKTEPIIIDQHAVPTLFGSDDIAKRNVQNMFVRNEQIEITDNVELTDCDVDVEMDQYQDINTRFSNLCRICGESCLDGIEIFTEKGIELKIREKMSLHLPINPSLEDLMPQKICSNCYDNLETAHLLVTTSLKTDMRLRKFLNIKEGLSYYDNKYNEIVKTCSSEVINEMYMNRTIHTMSIELSPNEGEEVIMNQDVPAKLSYPEDIVLKKASSSNNIRKEMQSELNRLIESYSDAQNHIANGINEIASLHCKDTFKTRAMFENQKILCDEDEIIVQKQKELSGSINANESLVLLNCKPFHEENYEITDKQPATEVDCNVNKNTDNFNIIAMAETNKKCGHCQSIYSTKKELLNHIAKRHESQLLFACIICDKNYEKWSSLDVHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHACEICGNAFRSRFHLGEHMNQHNDHKPYFCEKCGKAFYKRIQLRQHRLSHGMNKHVCPICGASFNRKGNMNTHLKRHSNDSGMYTCSICTCKCKSMSELKLHRKKHTEEDIMESIKKKHSDQTEWQCKTCSQMFTNRTDFLNHVRLHKGERTRVECDICGKQLASKNSLIYHKKSMHSKERPHMCQYCGDSFVSKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSDVKPHRCTYCGKSFTRKGALAVHLRIHTGEKPFPCEICGRRFSQKNDMLKHTKTHHAKMLHCEKCDEVFAKKKDILKHLSVHKQSDLID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00861353;
90% Identity
iTF_00762710;
80% Identity
iTF_00763282;