Basic Information

Insect: Agapostemon virescens
Gene Symbol: -
Assembly: GCA_028453745.1
Location: CM052083.1:10434143-10436938[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.013 1.8 9.9 3.2 2 23 404 426 403 426 0.96

2 14 0.014 2 9.8 0.1 1 23 432 454 432 454 0.92

3 14 3e-06 0.00042 21.3 3.4 1 23 460 482 460 482 0.96

4 14 0.00017 0.024 15.8 3.3 1 23 491 513 491 513 0.97

5 14 2.8e-05 0.0038 18.3 2.0 1 23 519 541 519 541 0.97

6 14 9.7e-06 0.0013 19.7 3.5 1 23 546 568 546 568 0.97

7 14 0.00015 0.021 16.0 3.4 1 23 575 597 575 597 0.98

8 14 0.0006 0.083 14.1 1.5 2 23 617 638 616 638 0.96

9 14 0.0011 0.15 13.3 0.2 2 23 646 668 645 668 0.96

10 14 0.00038 0.053 14.7 0.6 1 23 674 696 674 696 0.96

11 14 0.00031 0.043 15.0 4.2 1 23 702 724 702 724 0.98

12 14 5.7e-08 7.9e-06 26.8 1.2 1 23 730 752 730 752 0.97

13 14 8e-06 0.0011 20.0 2.7 1 23 758 780 758 780 0.98

14 14 6.8e-05 0.0094 17.1 0.4 2 23 786 807 785 807 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.013	1.8	9.9	3.2	2	23	404	426	403	426	0.96
2	14	0.014	2	9.8	0.1	1	23	432	454	432	454	0.92
3	14	3e-06	0.00042	21.3	3.4	1	23	460	482	460	482	0.96
4	14	0.00017	0.024	15.8	3.3	1	23	491	513	491	513	0.97
5	14	2.8e-05	0.0038	18.3	2.0	1	23	519	541	519	541	0.97
6	14	9.7e-06	0.0013	19.7	3.5	1	23	546	568	546	568	0.97
7	14	0.00015	0.021	16.0	3.4	1	23	575	597	575	597	0.98
8	14	0.0006	0.083	14.1	1.5	2	23	617	638	616	638	0.96
9	14	0.0011	0.15	13.3	0.2	2	23	646	668	645	668	0.96
10	14	0.00038	0.053	14.7	0.6	1	23	674	696	674	696	0.96
11	14	0.00031	0.043	15.0	4.2	1	23	702	724	702	724	0.98
12	14	5.7e-08	7.9e-06	26.8	1.2	1	23	730	752	730	752	0.97
13	14	8e-06	0.0011	20.0	2.7	1	23	758	780	758	780	0.98
14	14	6.8e-05	0.0094	17.1	0.4	2	23	786	807	785	807	0.96

Sequence Information

Coding Sequence: ATGAAAATAGTTTGTGCTGCAAAGAATTGTAAATACTCTTCGGAAACTGAAGACTCGACACATGTCATTTTTATTAATTTCCCAAACGATGAAATGTCAAAAATATGGGCACACCATTGTGACAGAACAGACCTTTTAACTAAGTCTAATGAAGAATTACATTTAAATTACTATATATGTTCTCATCACATTGAAGACCGTTACTATATAAACAAAGCCGATCCCATTATGATAGATCAACATGCTGTTCCTACATTATTCGGATCAGACAATATAGCAAAACGAAATGTACAAAATTTATTTGTTAGAAATGAACAAATTGAAGTATCAGATAATGTTGAATTGACAGAGATAGATGTTGAGATGGGTCCGTATCAAGATATTAACACAAGACTTAGCAATTTATGTAGAATATGTGGAGAACCGTGTTTGGATGGTATAGAAATTTTCACAGAGAAAGGCATACAGTTAAAAGTAAGAGAAAAAATAAGTTTACACTTGCCAATAAATCCTACTTTGGAAGATTTAATGCCACAAAAAATATGTACCAATTGTTATGATAATTTAGAAACTGCTCATTTATTAGTGACAACATCTTTAAAAACTGATATGAGATTGAGAAAGTTCCTTAATATCAAGGGAGGATTTAGTTATTATGACAATAAATACAATGAAATAGTAAGGATGTGTTCGGCAGAAGTAATTCATGAGATGTACATGAATAAAACAATTCATACAATGTCTATAGAATTATCGGCTACCGAAGGAGGGGAAATACTAATGAATCAGAATGTGCCTACAAAATTGAATTATCCAGAGGATATTGTCTCAAAGAAAGCTAGTTCTTCGAATAACATAAGAAAAGAAATGCAATCTGAATTAAGTAGACTTATCGAATCGTACAGTGATGCACAAAACGATATAGCAAATGGTATTAACGAGATTACATCATTCCATACAAAAGATTCATTTAAAACACAAACAATATTTGAGAATCACAAGATGTTGTGCGATGAAGGTGAAATAATAATACAGAAAGAAATATCTAGTAGTACAAACACTAATGAATCGTTAGAACCTCCAAGTTGTAAGTCTTTTCAAGGAGAAAATTATGAAGTCACAAATAAAGTGGACTCAACAAGAGTTGACTGTAATGTCCATAACAATTCTCACAACATAAATACTGTTGCAATGGTGGAAACAAATAAAAAATGTGGTCACTGTCAGTCCATTTACAGTACAAAAAAAGAGTTACTAAATCACATTACAAAACGTCACAAAAGTCAGCTATTATTTGCATGCATTATCTGCGATAAAAATTATGAAAAATGGTCGAGCTTAGATGTTCACGAAGCTACGCACAGAACAGACAAACCCTATCTGTGCGATTTATGTGGAAAAAGTTTTAAGCACTCGAATAATCTAAGAGGACATAAGAGAACTCATTTAGATGACTCGAAAAAGAAACGGCATTCTTGCGAAATTTGTGGAAACTCGTTTAGATCTAGATTTCACTTGGGAGAACACATGAATCAGCACAACGACCATAAACCATACTTTTGCGAAAAGTGTGGCAAAGCTTTTTACAAGAGGATACAATTAAGACAACACAGACTATCCCATGGTTTGAGCAAACATTGTTGTCCAATATGTGGAGCGTCTTTCAATCGTAAAGGGAATATGAATACTCACCTTAAAAGACATAGTAACGATAGTGGGATGTACACCTGTAGCATTTGCGGGTACAAGTGTAAATCGATGAGCGAATTGAAATTACATCGAAAGGAACATACGGAGGAAGATATTATGGAAAGTATTAAAAAACGGTATTCCAATCGAACGGAATGGCAATGCAAAACTTGTAGTCAGACGTTCGCCACGCGAACTGATTTTTCAAACCACGAACGCTTGCATAAAGGAGAAAGAATAAGGGTTGAATGTGATATTTGCGGCAAACAATTGGCTAGTAAAAACTCATTAATTTATCATAAGAAGTCTATGCATTCTAAAGAGAGGCCACACATGTGTCAATATTGCGGGGAATCGTTCGTTTCCAAAGAGGCGCGTCTCATACACGAAAGGATCCACACCGGAGAACGCCCTTACGTTTGCAAAATATGTAAAATGAAGTACAAATGTTCCAGCAATCTTAATCAGCATATGAAAATTCATTCGGACGTTAAACCCCATGTATGTACATATTGCGGTAAAAGTTTCACACGCAAGGGAGCGCTGTCCGTTCACCTAAGAATCCATACAGGTGAAAAACCTTTTTCCTGCGAAACCTGTGGCAGAAGGTTTTCGCAAAAGAACGATATGTTGAAACATACGAAAACGCACCAAGCGAAAGTGTTGCGTTGCGAAAAATGCGACGAAGCTTTCACGAGAAAGAAAGATATTTTAAAACACCTCGCAATGCACAAACAAAGTGACCTTATAGTTTAA
Protein Sequence: MKIVCAAKNCKYSSETEDSTHVIFINFPNDEMSKIWAHHCDRTDLLTKSNEELHLNYYICSHHIEDRYYINKADPIMIDQHAVPTLFGSDNIAKRNVQNLFVRNEQIEVSDNVELTEIDVEMGPYQDINTRLSNLCRICGEPCLDGIEIFTEKGIQLKVREKISLHLPINPTLEDLMPQKICTNCYDNLETAHLLVTTSLKTDMRLRKFLNIKGGFSYYDNKYNEIVRMCSAEVIHEMYMNKTIHTMSIELSATEGGEILMNQNVPTKLNYPEDIVSKKASSSNNIRKEMQSELSRLIESYSDAQNDIANGINEITSFHTKDSFKTQTIFENHKMLCDEGEIIIQKEISSSTNTNESLEPPSCKSFQGENYEVTNKVDSTRVDCNVHNNSHNINTVAMVETNKKCGHCQSIYSTKKELLNHITKRHKSQLLFACIICDKNYEKWSSLDVHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHSCEICGNSFRSRFHLGEHMNQHNDHKPYFCEKCGKAFYKRIQLRQHRLSHGLSKHCCPICGASFNRKGNMNTHLKRHSNDSGMYTCSICGYKCKSMSELKLHRKEHTEEDIMESIKKRYSNRTEWQCKTCSQTFATRTDFSNHERLHKGERIRVECDICGKQLASKNSLIYHKKSMHSKERPHMCQYCGESFVSKEARLIHERIHTGERPYVCKICKMKYKCSSNLNQHMKIHSDVKPHVCTYCGKSFTRKGALSVHLRIHTGEKPFSCETCGRRFSQKNDMLKHTKTHQAKVLRCEKCDEAFTRKKDILKHLAMHKQSDLIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00861353;
90% Identity: iTF_00024667;
80% Identity: iTF_00024667;