Hqua012866.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Halictus quadricinctus
Gene Symbol
-
Assembly
GCA_028454245.1
Location
CM052125.1:9551467-9554282[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0078 0.63 10.7 2.4 2 23 409 431 408 431 0.96
2 14 0.016 1.3 9.8 0.1 1 23 437 459 437 459 0.92
3 14 3.3e-06 0.00027 21.3 3.4 1 23 465 487 465 487 0.96
4 14 0.00029 0.023 15.2 1.8 1 23 496 518 496 518 0.96
5 14 3e-05 0.0024 18.3 2.0 1 23 524 546 524 546 0.97
6 14 9.3e-07 7.6e-05 23.0 0.9 1 23 551 573 551 573 0.97
7 14 0.024 2 9.2 7.8 1 23 580 602 580 602 0.99
8 14 0.00027 0.022 15.3 1.6 2 23 622 643 621 643 0.97
9 14 0.023 1.9 9.2 1.0 2 21 651 670 650 673 0.92
10 14 0.016 1.3 9.8 0.6 1 23 679 701 679 701 0.96
11 14 0.0003 0.024 15.2 3.2 1 23 707 729 707 729 0.98
12 14 4e-08 3.3e-06 27.3 1.3 1 23 735 757 735 757 0.98
13 14 3e-06 0.00024 21.4 2.8 1 23 763 785 763 786 0.96
14 14 0.0014 0.11 13.1 1.0 2 23 791 812 790 812 0.96

Sequence Information

Coding Sequence
ATGAAAATAGTTTGTGCTGCAAAGAATTGTAAATACTCTTCAGAAACTGAAGACTCGACACACGTTATTTTTATTAATTTCCCGAACGATGACATGTCTAAAATATGGGCACACCATTCTGGCAGAACAGACCTTTTGGCAAAGTCTAACGAAGAATTACATTTAAATTACTATGTATGTTCTCATCACATTGAAGACCATTACTATTTGAACAAAACTGAACCCATTATAATAGACCAACATGCTGTTCCTACATTATTCGGATCAGACGATATAACGAAAAGAAATGTACAAAATATGTTTGTTAGAAACGAGCAAATTGAAATAACAGACAATGTTGAGTTAACAGATTGTGATGTAGATGTTGAGATGGACCAGTATCAAGATATCACCACAAGGTTTTCCAATTTATGTAGAATCTGTGGCGAATCATGTTTGGATGGTATAGAGATCTTCACTGAGAAAGGCATAGAATTAAAAATAAGAGAAAAAATGAGTTTACACTTGCCAATAAATCCCAGTTTAGAAGACTTAATGCCGCAAAAAATATGTAGCAATTGTTATGATAATTTGGAAACAGCTCATTTATTAGTTAAGACATCTTTAAAGACTGATATGAGATTGAGAAAGTTTCTAAATATCAAGGAAGGATTAAGTTATTATGACAATAAATACAATGAAATAGTAAAAACATGTTCTTCGGAAATGATAAATGAACAAGTGTACATGAATAGAACAATCCATACTATGTCTATAGAATTATCGTCTAATGAAGGAGAAGAAGTAGTAATGAATCAGGATGTGCCTGCAAAATTGAATTATCCGGAGGATATTGTTCCAAAGAAAGCTAGCTCTTCAAACAACATAAGAAAAGAAATGCAATCTGAATTAAATAGACTTATTGAATCGTACAGTGATGCACAAAATCATATAGCAAACGGTATTAACGAGATTGCATCATTCCACTGTAAAGATACATTTAAAACTCGAGCAATGTTTGAGAATCAGAAGATATTGTGCGACGAAGATGAGATAATTGTACAGAAGCAGAAAGAAATATCTGGTAGTATAAACGCTAATGAATCATTAGTGTTTTTAAATTGCAAACCTTTTCATGAAGAAAATTACGAAATCACAGATAAACAGCCTGCAACAGAAGTTGACTGCAATGTTAATAAAAATACCAATAATTTCAATATTATTGCAATGGCGGAAACAAATAAAAAATGTGGTCACTGTCAGTCCATTTATAGCACCAAAAAAGAACTATTAAATCACATCGCAAAACGTCACGAAAGTCAACTATTATTCGCGTGCATTATCTGCGATAAAAATTATGAAAAATGGTCGAGTTTAGACGTTCACGAAGCTACGCACAGGACAGATAAACCGTATCTGTGTGATTTATGTGGAAAGAGTTTTAAGCACTCCAATAATCTAAGGGGTCACAAGAGAACCCATTTAGACGACTCGAAAAAGAAACGACACGCCTGTGAAATTTGTGGGAACGCGTTTAGATCTAGATTTCACTTGGGAGAACACATGAATCAGCACAATGACCACAAACCATACTTTTGCGAAAAGTGTGGAAAAGCTTTTTACAAGAGGATACAATTAAGGCAACACAGACTATCTCATGGAATGAATAAACATGTTTGTCCAATATGTGGAGCATCTTTCAATCGGAAAGGAAATATGAATACTCACCTCAAAAGACATAGCAACGATAGTGGAATGTACACCTGTAGTATTTGCACGTGCAAATGCAAATCGATGAGCGAATTAAAATTGCATCGGAAGAAACATACGGAGGAAGATATTATGGAAAGTATTAAAAAAAAGTACTCTGATCAAACAGAATGGCAATGCAAAACTTGTAGTCAGATGTTCACCACTCGAACTGATTTTTTAAACCACGTACGCTTGCATAAAGGAGAAAGAACGAGAGTTGAATGTGATATTTGTGGCAAACAGTTGGCTAGTAAAAATTCTTTAATTTACCATAAGAAATGTATGCATTCCAAGGAGAGGCCGCACATGTGTCAATATTGCGGGGACTCGTTCGTTTCCAAAGAGGCACGTCTCATACACGAAAGGATCCACACTGGAGAACGTCCTTACGTTTGCAAAATATGTAAAATGGAATACAAGTGTTCCAGCAATCTGAATCAGCATATGAAAATTCATTCGGATGTTAAACCCCATAGGTGTACATATTGCGGTAAAAGTTTCACACGCAAGGGAGCGCTAGCTGTTCATCTAAGAATCCATACAGGCGAAAAACCCTTTCCCTGCGAAATTTGCGGCAGAAGATTTTCGCAAAAGAACGATATGTTGAAACATACGAAAACGCATCACGCAAAAATGTTGCATTGCGAGAAATGCGACGAAGTTTTCGCGAAAAAGAAAGACATTTTAAAGCACCTCTCGGTGCATAAACAAAGTGACCTTATAGATTAA
Protein Sequence
MKIVCAAKNCKYSSETEDSTHVIFINFPNDDMSKIWAHHSGRTDLLAKSNEELHLNYYVCSHHIEDHYYLNKTEPIIIDQHAVPTLFGSDDITKRNVQNMFVRNEQIEITDNVELTDCDVDVEMDQYQDITTRFSNLCRICGESCLDGIEIFTEKGIELKIREKMSLHLPINPSLEDLMPQKICSNCYDNLETAHLLVKTSLKTDMRLRKFLNIKEGLSYYDNKYNEIVKTCSSEMINEQVYMNRTIHTMSIELSSNEGEEVVMNQDVPAKLNYPEDIVPKKASSSNNIRKEMQSELNRLIESYSDAQNHIANGINEIASFHCKDTFKTRAMFENQKILCDEDEIIVQKQKEISGSINANESLVFLNCKPFHEENYEITDKQPATEVDCNVNKNTNNFNIIAMAETNKKCGHCQSIYSTKKELLNHIAKRHESQLLFACIICDKNYEKWSSLDVHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHACEICGNAFRSRFHLGEHMNQHNDHKPYFCEKCGKAFYKRIQLRQHRLSHGMNKHVCPICGASFNRKGNMNTHLKRHSNDSGMYTCSICTCKCKSMSELKLHRKKHTEEDIMESIKKKYSDQTEWQCKTCSQMFTTRTDFLNHVRLHKGERTRVECDICGKQLASKNSLIYHKKCMHSKERPHMCQYCGDSFVSKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSDVKPHRCTYCGKSFTRKGALAVHLRIHTGEKPFPCEICGRRFSQKNDMLKHTKTHHAKMLHCEKCDEVFAKKKDILKHLSVHKQSDLID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00861353;
90% Identity
iTF_00762602; iTF_00861353; iTF_00865483; iTF_00866859; iTF_00864692; iTF_00864021; iTF_00864789; iTF_00863320; iTF_00863420; iTF_00864124; iTF_00866173; iTF_00862049; iTF_00860575; iTF_00860446; iTF_00862733; iTF_00763282; iTF_00763379; iTF_00862617;
80% Identity
iTF_00762602;