Lfig005406.1
Basic Information
- Insect
- Lasioglossum figueresi
- Gene Symbol
- -
- Assembly
- GCA_028455805.1
- Location
- CM052190.1:1723550-1726787[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.2 6.7e+02 1.3 0.5 5 20 319 334 318 336 0.90 2 15 0.017 1.6 9.6 2.6 2 23 397 419 396 419 0.96 3 15 0.032 2.9 8.7 0.1 2 23 426 447 425 447 0.90 4 15 3e-06 0.00028 21.4 3.4 1 23 453 475 453 475 0.96 5 15 0.00013 0.012 16.2 1.9 1 23 484 506 484 506 0.97 6 15 6e-06 0.00056 20.4 1.8 1 23 512 534 512 534 0.97 7 15 8.6e-07 8e-05 23.1 0.9 1 23 539 561 539 561 0.97 8 15 0.041 3.9 8.3 6.5 1 23 568 590 568 590 0.99 9 15 0.0013 0.12 13.0 0.7 2 23 610 631 609 631 0.97 10 15 0.00094 0.087 13.5 0.2 2 23 639 661 638 661 0.96 11 15 0.00038 0.036 14.7 0.6 1 23 667 689 667 689 0.96 12 15 0.00028 0.026 15.2 3.2 1 23 695 717 695 717 0.98 13 15 8.4e-08 7.8e-06 26.2 1.2 1 23 723 745 723 745 0.98 14 15 1.2e-05 0.0011 19.5 3.6 1 23 751 773 751 774 0.96 15 15 0.00038 0.036 14.7 0.3 2 23 779 800 778 800 0.96
Sequence Information
- Coding Sequence
- ATGAAAATAGTTTGTGCTGCAAAGAATTGTAAATACTGTTCGGAAACTGAAGACTCGACGCACGTCATTTTTATTAATTTCCCGAACGATGACATGTCTAAAATATGGGCACACCATTGCGGCAGATCGGACCTTTTAACAAAGTCTAACGAAGAGTTACATTTAAATTACTATGTCTGTTCCGACCACATCGAAGACCATTACTATTTGAATAAAACTGACCCCATTATAATAGACCAACATGCTGTTCCTACATTATTCGGATCAGATGATTTAGCAAAGAAGAATGTAGCAAATATGTTTGTTAGAAACGAACAAATTGAAGTAACAAACAATGTCGAATTAACGGATTGCGATATAGATGTCGAGATGGACCAGTATCAAGATATTAACACAAAGTTTTCCAATTTATGTAGAATATGTGGCGAGCCATGTTTAGACGGTATAGAAATCTTCACCGGAAAAGGCATAGAACTAAAGATAAGAGAAAAAATGAGCTTACACTTGCCTATAAGTCCTAATTTGGAAGACTCGATGCCACAAAAGATATGTAGCAATTGTTACGATAATTTGGAAGCAACTCATTTATTAGTTACGACATCTTTAAAGACCGATATGAGACTGAGAAAGTTTCTAAACACCAAGGAAGGATTAAGTTATTACGACAATAAATACAATGAAATAGTAAGAACGTGTTCTTCGGAGGTGATAAACGAGATGTACATGAACAGAACAATTCATACTATGTCTATAGAACTATCGTCTAACGAAGGAAGAGAAGTAATGATGAATCAGGATGTGCCCACAAAATTGAGTTATTCAGAGGATCCAAAGAAAGCTAGCTCTTCGAACAACATAAGAAAAGAGATGCAATCCGAATTAAATAGACTTATCGAATCGTACAGCGGAGCACAAAACGATATAGCAAACGGTATTAACGAGATTGCATCGTTCCATTGTAAAGATACGTTTAAAACTCGAGTAATGTTTGAGAATCACAAGATACTGTGCGACGAAGATGAAATAATAGTACAGAAGCAGAAGGAAATATCTGGTAGTATAAATGCGAATGAATCATTAGTGCTTTTGAATTGCAAACCTTTTCAAGAAGAACATTACGAAGTCACGGATAAACAGCACGCGACAGAAATTGATATAGATACTATTGCAATGGCGGAAACAAATAAGAAATGTGGTCATTGTCGGTCCATTTATAGCACGAAAAAAGAACTATTGAATCACATCGCGAAACGTCACGAAAGTCAACTGTTGTTCGCGTGCATTACCTGCGATAAAAATTATGAAAAGTGGTCGAGCTTAGATGTTCACGAGGCTACGCACAGAACAGATAAACCGTATTTGTGCGATTTATGCGGAAAGAGTTTTAAGCACTCGAATAATCTAAGGGGTCACAAGAGAACCCATTTAGACGACTCGAAAAAGAAACGGCACGTCTGCGAAATTTGTGGAAACGCGTTTAGGTCTAGATTTCATTTGGGAGAGCACATGAACCAGCACAACGACCACAAACCATACTTTTGCGAAAAGTGTGGCAAAGCTTTTTCCAAGAGAATACAATTAAGGCAACACAGACTATCTCATGGAACGAATAAACATGTTTGTCCGATATGTGGAGCATCTTTCAATCGCAAAGGAAATATGAATACTCACCTGAAAAGACATAGCAACGACAGTGGAATGTACACCTGTAGCATTTGCGCGTGCAAATGTAAGTCGATGAGCGAATTGAAATTGCATCGGAAGAGACACACGGAGGAAGACATCGTGGAAAGTATTAAGAAAAAGTACTCCGATCGAACGGAGTGGCAGTGCAAAACTTGTAGCCAGATGTTTGCAGTGCGAACAGATTTTTTAAACCACGTACGCTCGCATAAGGGAGAGAGAACGAGGGTTGAATGTGATATTTGTGGCAAAGAGTTGGCTAGTAAAAATTCTTTAATATACCATAAGAAATCTATGCATTCCAAGGAGAGGCCGCACATGTGTCAATATTGTGGGGAATCGTTCGTTTCGAAAGAGGCGCGTCTCATACACGAAAGAATCCACACCGGAGAACGTCCTTACGTTTGTAAAATTTGCAAAATGGAATACAAGTGTTCCAGCAATCTCAATCAGCATATGAAAATTCATTCGGACATTAAACCTCATAGATGTACATACTGCGGTAGAAGTTTCACGCGCAAGGGAGCGCTGGCTGTTCACCTAAGAATCCATACAGGCGAAAAACCCTTTCCCTGCGAAACCTGTGGCAGAAGATTTTCGCAGAAGAACGATATGTTGAAACATACGAAAACTCATCACGCGAAACCGTTGCGTTGCGAGAAATGCGACGAGGTTTTCGCGAAGAAGAAGGATATTTTGAAGCATCTCGCGATGCACAAACAAAGTGACCTTATAGTTTAA
- Protein Sequence
- MKIVCAAKNCKYCSETEDSTHVIFINFPNDDMSKIWAHHCGRSDLLTKSNEELHLNYYVCSDHIEDHYYLNKTDPIIIDQHAVPTLFGSDDLAKKNVANMFVRNEQIEVTNNVELTDCDIDVEMDQYQDINTKFSNLCRICGEPCLDGIEIFTGKGIELKIREKMSLHLPISPNLEDSMPQKICSNCYDNLEATHLLVTTSLKTDMRLRKFLNTKEGLSYYDNKYNEIVRTCSSEVINEMYMNRTIHTMSIELSSNEGREVMMNQDVPTKLSYSEDPKKASSSNNIRKEMQSELNRLIESYSGAQNDIANGINEIASFHCKDTFKTRVMFENHKILCDEDEIIVQKQKEISGSINANESLVLLNCKPFQEEHYEVTDKQHATEIDIDTIAMAETNKKCGHCRSIYSTKKELLNHIAKRHESQLLFACITCDKNYEKWSSLDVHEATHRTDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHVCEICGNAFRSRFHLGEHMNQHNDHKPYFCEKCGKAFSKRIQLRQHRLSHGTNKHVCPICGASFNRKGNMNTHLKRHSNDSGMYTCSICACKCKSMSELKLHRKRHTEEDIVESIKKKYSDRTEWQCKTCSQMFAVRTDFLNHVRSHKGERTRVECDICGKELASKNSLIYHKKSMHSKERPHMCQYCGESFVSKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSDIKPHRCTYCGRSFTRKGALAVHLRIHTGEKPFPCETCGRRFSQKNDMLKHTKTHHAKPLRCEKCDEVFAKKKDILKHLAMHKQSDLIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00861353;
- 90% Identity
- iTF_00762710;
- 80% Identity
- -